Array 1 540388-540775 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL647096.1 Pseudomonas sp. AAC Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 540388 28 96.4 32 .........T.................. CAGTAGCTCGGAAAAAGCCAGGGCGTTGAGGA 540448 28 96.4 32 .........T.................. AAGCAGCTGCTGGGCGAGGACAGTGTCGAGGA 540508 28 96.4 32 .........T.................. ACCTTGCCGCCGGGCCGCCCAGAGTCGAACAC 540568 28 100.0 32 ............................ TTGTGCGGCAGTATTCGAAATTGCAGTAGCTC 540628 28 100.0 32 ............................ GCATAACCCAACCCCATTCCACCATCGCCGGC 540688 28 100.0 32 ............................ ATCACCATCGACCTGACCAAGGCCGCCCAAGT 540748 28 92.9 0 ............G........G...... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 CTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCGCCAGCAACTCGCCGACGCCGTCGAACACCCGGTTCTCGTACAACCCGGTGTCCTTGAAGCGCATCCGGTAATGGTTCACCGCCTCCCAGGCCCGCGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGGCCGATGAAGTGTTCGAGCCGGCGCAGGTCCGGCTCGTCGATGCCCAACTGCGCCAGGGCATACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTGAGGGTGCCGTCGAGGTCGAAGAGGATGTTCTGGTAGTGCATGGGCAAGGCTGCGACAGGAAGAATCGAACCGGAAGCATACAACTGGCCTCCGTACCGACCAAACGCCCATGCAATGACTTCCTGCCCTTTTTCTGGAGCCTCTTGCGAGTCCCATGAAAATCAATGGTTTGGAGAGGCCCCTGAAAAAAGGGTTATGCGTGTGTATAGGGTGCTTTCTCGTGGGAAGTCAGGGGGGTGAGGAGTAACATCTCTA # Right flank : ATGCGAGGGCGGACTAAATGACCGCCAAGGCCCCTTCACTGCCATATAGGCAGTTCTTCCCATGCCAGGCAGTCAAGCAAACCTCCATCATTCCCTTCCCCCGCATGCAGCAGTAGCATCGCGCAATCATCCCGCTTCGGCACCCGCGACCATGGACGAGTTCGCCCCTTCCGACCTGAAGACCATTCTCCATTCCAAGCGCGCCAACCTGTACTACCTCCAGCACTGCCGGGTACTGGTCAAGGGGGGCCGGGTGGAGTACGTCACCGATGAAGGCAAGCGTTCGCTGTACTGGAACATCCCTATCGCCAACACCACCTGCCTGCTGCTCGGCACCGGCACCTCGGTCACCCAGGCCGCCATGCGTGAGTTGGCCAGGGCCGGTGTCATGGTCGGCTTCTGCGGTGGAGGCGGGACGCCCCTGTTCAGCGCCAACGAGATGGAAGTGGAGGTCGCCTGGTTTCCGCCGCAGAGCGAATACCGACCCACGGAATACCTGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : CTTCACTGCTGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 549453-549960 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL647096.1 Pseudomonas sp. AAC Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 549453 28 96.4 32 .....A...................... CTGATGCCGTACTGGTTCGCCGCCAGCGGCCG 549513 28 96.4 32 .....A...................... TGGGAGGGAAGGTCCTAGTCAGCGCCGCATCG 549573 28 96.4 32 ............A............... TACTACTGGTCGAGCACGCAGCGCTCCGCCAA 549633 28 96.4 32 ............A............... TTGCGCGCCTGGATATCGGCGTAGGCCTCGAT 549693 28 100.0 33 ............................ CAGTAGTCGAACGGTAGGTCAGCCCCGTCCTGG 549754 28 100.0 32 ............................ ATCAGCCAGATACAGCGCAGAGTCAATTCGTT 549814 28 100.0 32 ............................ AACCTGCGCGGCGCCTACCTGGGCGGCGCCAA 549874 28 89.3 32 ............A.....C........G TTCGCGCTCAAAAAGTACCGCGGCGGGATCGA 549934 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 96.8 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCGCTGGATTCGTTGATGGCTCAACCCTGGTTATCCGGCATGCGCGACCACCTGCGCCTGGGCGAACTGCTGCCGGTTCCCGAGGGGGCGCAGCATCGCCAGGTCCGCCGCGTGCAGGCCAAGAGCAACCCGGAGCGCCTGCGGCGGCGGCAGATGCGCCGCCATGGTTTCAGCGAAGAAGAAGCCAGGCAACGCATTCCCGACAGCGCCGCCCGCCGGCTCGACTTGCCCTACGTCCGGTTGCGCAGTCAGAGCAGTGGGCAGCACTTTCGTCTGTTCATCCACCACGGCCCTTTGCAGAGCCAACCGGTGGCCGGGCACATCAACCGCTATGGGCTGAGCGATGGGTGTACTGTTCCCTGGTTCTGACCCTTTTTTCCGGGGCATTCTGTACATCTTGGAAAATCAGTCACTTACAAGGGCCGTCGAAAAAAGGGATAGATGAGCTTAATGGCTGGTTTTCCTTTTAGCCACAACGAGTTGGGAGCTTGAGCCTCTA # Right flank : AGCACCGGACACTCGGAAGAGCATTCCTGCGCGCCTCATTGCCGTACAAACAGACCGGCGCCCAGTCGTCTCCGCGCCGCCTGTTGCCTTATTCGGCATAGCCCTCGGCGATGTGCTGGTCCTTCAGCTTCACGTAGTTGCCGGCCGTATAGGCGAAGAAGGACCTTTCCTTGTCGCTCAGCGGGCGGGCCTTCTTCGCCGGGCTGCCGACGTAGAGGAAGCCGCTCTCCAGCACCTTGCCCGGCGGCACCAGGCTGCCGGCGCCGAGGATGACTTCGTCCTCTATCACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTGCCGACGCTGCAGCCGTGCAGCAGGACCTTGTGGCCGACGGTCACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTCCGGTTGCCGATGCGGATGCGGTGCATGTCGCCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : CTTCAATGCCGTGTAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //