Array 1 360942-361572 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ034046.1 Lactobacillus helsingborgensis strain Bma5 Bma5_scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 360942 36 100.0 30 .................................... AAAGTATTAATGCGTTTCGCGATTATATGG 361008 36 100.0 30 .................................... TTTAAGTGGTAAATTTTGGTATCTAGGTTG 361074 36 100.0 30 .................................... AATCATTTACATATTCGTAAGGCTTATTGC 361140 36 100.0 30 .................................... ACTAAGGCTGAACAGTACCTCATAAAATTA 361206 36 100.0 30 .................................... CGATACTGATCAGTTAATAATGGCGCACTA 361272 36 100.0 30 .................................... TTCAACCTTATTTTAATATCACAGGTACAG 361338 36 100.0 30 .................................... GTAATATTAATAATGAAGAAAAAACTGATA 361404 36 100.0 30 .................................... TTTATCGTTAAAAAATATCATTGGTGCGAT 361470 36 100.0 30 .................................... AGTTTGAAAAGCTATCTGTTGATGACCTTA 361536 36 75.0 0 .................G..CA..AC..T...AT.T | C [361563] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Left flank : AGTGGCGATATTACTAAAAAGTATATGACACATATTGTAAGTAGTTATATTACAAACTTGGATGAGGAGAATCGCAATAAGGTTATTAAATCTTTTTATAATTTAGAAACTACTTTGCATGATACGTTATTACTTGAAGACTTACCTTTAGAAATTACTTTTGATGAAGACCTGAAAAAGTTACTTAAACTAACTGATGTTCATTTGGACAAAACTATTTTAAATAGTCCGTATGGTATAATAGAAACAGTTTTAAGAATTCACCAAGTTTGTAATTTGAGGACGATCCCCGTTATTTGTAATGTAGATCATTACATAGAAGAACGGGAGTGGCAAGAATTAGCTAGTCTTGTTACGCAAATGAAATTGATTGTGATTTTAATCGAATTTACTGATGCTAAAAATTTACAGATACCTAAAGACATACCTTTTTATTATATTGATAAGGATCTAGTTGATTGGTATTAACGGTATTATTAAAATTTGATGATAAAATATCG # Right flank : TCTTAAGAAAAGTACCCTAAAATAAAGAAAGGTTTTTGTTTGTTTACATGAAAAATATACTAAAAAGTAACAACAATAAACTATACCTTTTGTCAGTGATCACCGATAACTTGGGCAGCTCTTTAATGTCATTTGCATTGCCGTTAATGGTACTAGATATTACTAAAAATGGTATCCACTTATCGATAATTTCCATTATTGAAACATTGCCCATTTTGATTTTAGGGCTTCCAGCAGGTGCGTTAACAGATAAATTCGATGTTAAAAGAATCCTTATTTTCAGTGATTTGATTAGGTTAATCAGCTATTTGATTCTTTCCGCATCCTTTCTATCCCATTTAACAGTCAATTGCATGATTTTCATTATTTATGCGGTATCACTTGTTGTCAGTGTAACCAACACGCTTAATACGGTGTCAGAAATTACTTTTGCTTCTTTTTTAGTAGAAAAGAAGGATTTTTCTGAATTAAACAGTCTGGTTTATGGCATACAATATGCA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1052846-1053409 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ034046.1 Lactobacillus helsingborgensis strain Bma5 Bma5_scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1052846 36 97.2 30 ....................T............... AACAGGTCATTTATACTAGCGCTGATAATA 1052912 36 97.2 30 ....................T............... ACTTTCTGCATTGTCCAGTTATCAAGCCCC 1052978 36 100.0 30 .................................... TGATTGGCGATGCTATTGGAGACGGTATCG 1053044 36 100.0 30 .................................... AGGTTAGCAAGTCGGATTTGATGAGCAACA 1053110 36 100.0 30 .................................... TCTTTTTTATCGCGAATTATCATGTATACA 1053176 36 100.0 30 .................................... CATTAAGTCAACTTACACTGACAAAAAAAC 1053242 36 100.0 30 .................................... CCAAGTAGTACAGAACACTACCAGAACCTT 1053308 36 100.0 30 .................................... TAGGTCTTGTTAACTTAACACCAGCTACAA 1053374 36 97.2 0 ....................T............... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.1 30 GTTTTAGATGGTTGTTAAATCGATGATGATTAGAAC # Left flank : CTGAAACTTTGGAAACTATCCGTCTTTCACGTAAGAACGGATACAACACCATGATTTCTCACCGTTCAGGTGAAACTGGTGACACATTTATCGCTGACTTTGCCGTTGCTGTTAACGGTGGTCAATTAAAGACTGGTGCCCCAGCTCGTTCAGAACGTGTTGAAAAGTACAACCGTTTGCTTGAAATCGAAGAAGAACTTGGCGAAGGCGAGCGTTTAGCTACATTCCCAGACAGTGTTGACAAAGACTAATTTGTTAATAAAAAAGCCTGCAATATTGCGGGCTTTTTTAGTGTCAAAATTTTTAAAAATGTGTTTTTAGCATAAATTCAAGATTTAAACTTCTATGCTATAATTTGAGTAAACATTTAATTTCTAAAACTGCATTATCAGGACTAGATTAGCTACCTTTTTCCTGATATTGCTGCAAAAGCTGGTCGTGTTTCTAATATTATTTGGTTTAATTCAACCATATTATTAAAATTTGATGATAAAACATCG # Right flank : CAGTTTACTACTGAAAGCAACGAGACTATGGGTTTTAGATGGTTGTTAAGCAAAAGCAAAATATTACCATAAGCTCACAATAAAAGGCTTGCTTTTAAAGCAAGTCTTTTTGTTTCGCCTATTTAACCAGCCAATTAGAAAATACAATCAATACTAGTCTTTTACAATATCTGTTCATTAAGTTCTTCATGCTAAATAACCAATAATTTTTAAAATATGATACAGACAATGTGGCAAGATCTGCAAATTGATTAAAACTAATTTTTATTTACTTTCTTATTGAATTCTCTCTTTGAAACATACTGGATTTTCTTAACATACTGACCTCTATGATCAATTTTGATATATTGCTTAGAAGGGTCGTAACCACCTACTCTTCTGATCCTATATGGAAGTTTCTTACCAGTCTTGGCATCATAAGCTTGAACGTTAAAATACTTTTGCGTATTCTTTTCTACTTGAGCATAACTTTTAGTTTCGGGAATTGTAAGATTGAAACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCGATGATGATTAGAAC # Alternate repeat : GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //