Array 1 109956-108035 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYQ01000002.1 Salmonella enterica subsp. enterica serovar Rissen strain 2012K-0157 NODE_2_length_562212_cov_3.55321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109955 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 109894 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 109833 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 109772 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 109711 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 109650 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 109589 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 109528 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 109467 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 109406 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 109345 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 109284 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 109223 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 109162 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 109101 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 109040 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 108979 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 108918 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 108857 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 108796 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 108735 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 108674 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 108613 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 108552 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 108491 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 108430 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 108369 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 108308 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 108247 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 108186 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 108125 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108064 29 93.1 0 A...........T................ | A [108037] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129402-126567 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYQ01000002.1 Salmonella enterica subsp. enterica serovar Rissen strain 2012K-0157 NODE_2_length_562212_cov_3.55321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129401 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 129340 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 129279 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 129218 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 129157 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 129096 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 129035 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 128974 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 128913 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 128852 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 128791 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 128730 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 128669 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 128608 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 128547 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 128486 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 128425 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 128364 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 128303 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 128242 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 128181 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 128120 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 128059 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 127998 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 127937 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 127876 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 127815 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 127754 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 127693 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 127632 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 127571 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 127509 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 127448 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 127387 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 127326 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 127265 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 127204 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 127143 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 127082 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 127021 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 126960 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 126899 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 126838 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 126777 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 126716 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 126655 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 126594 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //