Array 1 11958-11511 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXK01000125.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_71_length_12094_cov_48.0038_ID_141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11957 27 71.4 32 A....GGA.G.G.C..-........... AAGCACCCACGGGCTTAATTGTCCAATGGCTG 11898 28 100.0 32 ............................ AAAGGGGAAGTGATCGCGCAGTGTGGCCGAGC 11838 28 100.0 32 ............................ AGCGGCAACTGATGCAGGAGTGCGCCGATGAG 11778 28 100.0 32 ............................ TATCGTGGCTACGCCGCCGGCGGCGTGTACTG 11718 28 100.0 32 ............................ ATCATCATGTCGAGGCCGATCATTGTTTGGTT 11658 28 100.0 32 ............................ GCGGTGACCAGGGCTTGACCGCAGCGCTCAAC 11598 28 100.0 32 ............................ TGATGAACCGGATTACCGAGCGCGGCCTGGCG 11538 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGCTTGTAGGTCAGTTCGCCTTTTTCGATCTGATCAACGACGGCCAATTTAAAAGACAGTGAGTAATCTCGCTGTGTGCGCTTTACACCTTGCTCCATCTAGCTCTCCGGAAAATCGGCATGGGAGGTGTAAACCT # Right flank : CTCAAGAAAGAACAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCATAGGGTGAATGCCGCCATAGACGGTATCCGCCGGTCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGAATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGTCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCACTAAGCAACAGCGCCCCCCTCACTGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 540-210 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXK01000042.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_43_length_47846_cov_43.1518_ID_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 539 28 100.0 32 ............................ TGCCTGCCCTGCTCCACCACTGCGGATTCCAA 479 28 100.0 32 ............................ GAAGACCCTGCGCAAATGGGGTGACGTGTTCG 419 28 100.0 32 ............................ GCCAGGGGCTGGAGGAGGCTGAAGGTGCCTGC 359 28 100.0 32 ............................ TTGCGGCCTCGCCCAGCCTGACCGCCCAACTG 299 28 100.0 32 ............................ TCCCAGGTTGGCGGCGATAATCTCCAGCACCA 239 28 82.1 0 .......................GTCCT | T,T [213,215] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTGCCGGCTGGAAGGCGAGCGGGTGAGTATCGCCGGGCATGCGGTGCTGGTGGCGAGCGGAAGGATTCGATTGGGCTGAGGGGCGCTTCAGGAGGGGGATGACCTCGCGCATGCCAGACCTCCACATACCGAAGCCCTGATCCGCAGGGTGAATAACCGCTTGCGGTTATCCGCCTCTTATCCGGGGTATCGGCGGATACCGCCTGTGGCGGGCCACCCGAGCCTGTAGCGTCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : TGAAATAGGTTTACACCTGCTCAGGTAGGCCGATAGGCCTCAAAACGCCCGATGCACCGCATCGGGCGTTTTGTTTTTCAGGGCCATGTGAGGCCGCTCTGTGTTGTAGATCTGCACGGCTTCAGCAACCATTTTCCTTGCCTGCTCCAGATTTTCAGGGCTACTCAGCAGCAGCTCTGTTTTGAGGATTCCGTTGATGCGCTCAGCTAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10250-10583 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXK01000134.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_9_length_163694_cov_39.9811_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10250 29 100.0 32 ............................. TCGCCGTTCGACGGCGATCCCTGGTGGTAGGA 10311 29 100.0 32 ............................. GGGAGGCCGCGTATCGGTCGTGTCGGCTCACA 10372 29 100.0 32 ............................. CTTCTTGTGGCCGGCGAGGCTCACTACCGGGC 10433 29 100.0 32 ............................. TGCTCCGGCAATGTCGATCTCGACTGGCTTGA 10494 29 100.0 32 ............................. TAGCGCAGCCCGTCGAGGAGCTTGCGTTGCAG 10555 29 89.7 0 ............A............G.T. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CCGCTCGGCGCGGCTGGACATGCAGAAAGCCCTGGACCTGGCGGTGAAGAGCCGCGAGCGGGTGCGCTGAGGCGTTCCGCCGGCCCACGGCCTCACGGCGAGGCTTCCCGCGCAGTTCGCCGGACAGGGGGGCGCCGAACGCCAGTTAGCGATGCCGACCGGCAGCGGCGTGGCCATTGTCGTCTTCAGGCTCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCTCCGTTGGCCAGGAAGCGCGGCGAGTGCATGGACGTTCGGGGCCGGTTCGATGGTGAAAGGCGGGGCCATGTCTGCGGAATCTTGCTCGGTTCCGGGTGAGATGGGGCAGGGAATATAGGAGGGCGGCGGGTTTCGACTGGTTCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCAGCTTGGCCCGGAGGAATTTCGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGA # Right flank : GGTATCGACATCGATGGTGACCAGGCTGGTCCGATGTTCCCCCACAGGCGTGGGATAAACCTGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGTGCAGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAACAGATTGTTAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGTCAGGGGCGGGATCGGTCCCGGTCCATATCCCTCCTGCGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19810-20693 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZXK01000134.1 Pseudomonas aeruginosa strain HUM-242 PA3_F2_NODE_9_length_163694_cov_39.9811_ID_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19810 29 100.0 32 ............................. GCGGTAGCTTGCGCGTTCGCGATGAGGGTAGA 19871 29 100.0 32 ............................. CAGGATGCCGAGCAGCAGCCGGCCAATCCCGA 19932 29 100.0 32 ............................. CTGGGTTGCCAGTTGAACGGCCCTGGTACGGT 19993 29 100.0 32 ............................. CTGCTCGAGGGCAGCAATTCCAACGGATTGGG 20054 29 100.0 32 ............................. GCCGCCATATCGGCGGCCTTCGGCTGGACGTT 20115 29 100.0 32 ............................. CGCGTGGTGGCGCTGGAGCAGTACCTCTCGCA 20176 29 100.0 32 ............................. GGAACCATCAGGGAACCTTTTGCCGGCCGATT 20237 29 100.0 32 ............................. CCGAAAATGCTGGTGATCGAAGACAACCAGCC 20298 29 100.0 32 ............................. TGGATTCCGGTTGGGAAGGGCGTGGCGGTCTA 20359 29 100.0 32 ............................. CGTCGAGAACGCTTCTCGCCAGTCCTCGAAAT 20420 29 100.0 33 ............................. CTCCGCGTCGATGAGACGACCTACGAACTCATC 20482 29 100.0 32 ............................. GCGTACCGGCAGATGATGGACGCCCGCGCCGA 20543 29 100.0 32 ............................. TCGATCAAGGGCAAGGCCAAGGACCTCGACAA 20604 29 100.0 32 ............................. TGGACGAGGGTGGCATATGAGCGAGCGCGTGG 20665 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGACTGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //