Array 1 1311260-1312010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1311260 29 100.0 36 ............................. CCAAGTATTACCAAATTATAACATAGAAATCATAGA 1311325 29 100.0 36 ............................. AGCTGAAAAGGTCGCAAACATAGCAGAAAGAGGAAA 1311390 29 100.0 37 ............................. CGTTTATGATTTTTAATTGCATATTCAATAAAAAATT 1311456 29 100.0 37 ............................. AATACTGTTGTCAATAATCCTATTACTGTTAATGTTA 1311522 29 100.0 37 ............................. AAAGGAACTTTACCGCTTATCACTTCTTTTTTCTGTA 1311588 29 100.0 36 ............................. AAAGGCATCAGGAGAGATGAATTGAATCAAGGAGAA 1311653 29 100.0 36 ............................. AATTATTTTTCATAGTGGCAGCAACTTCAATTAATG 1311718 29 100.0 36 ............................. TCGCACGAATCCGTGCGACGTAATTAAAATTATATA 1311783 29 96.6 38 ...................A......... CCATCAACCTTATCAGAAACTTGACCATCCCAATCATA 1311850 29 100.0 38 ............................. ACATTTGCAATTTAATGTTAACTATCAATACCCCCAAT 1311917 29 100.0 36 ............................. AACAAAAAAGATACATCTGTAACTAATTTTTATACT 1311982 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.4 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATACTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAACAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATATAATGTCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTTCATATCTTTTAGTAGATACCTTTGTTGTTTTTTAATCTTTAGCAACTTGTTCTTGAGTGAACCTCTTATTTTTTTTAAGTTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACACATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAATATATTTAATCCTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1523898-1526179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1523898 29 100.0 37 ............................. CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG 1523964 29 100.0 37 ............................. TCGCACTTATTGGGATTAAATTCAACAACAATATCAA 1524030 29 100.0 37 ............................. GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA 1524096 29 100.0 38 ............................. AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC 1524163 29 100.0 36 ............................. AAAATCAAAGGCAACATCATAGTCACGTATATTATC 1524228 29 100.0 36 ............................. AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA 1524293 29 100.0 37 ............................. TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA 1524359 29 100.0 36 ............................. ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA 1524424 29 100.0 39 ............................. TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA 1524492 29 100.0 37 ............................. GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG 1524558 29 100.0 38 ............................. TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT 1524625 29 100.0 37 ............................. AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA 1524691 29 100.0 38 ............................. TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT 1524758 29 100.0 38 ............................. TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA 1524825 29 100.0 36 ............................. CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT 1524890 29 100.0 40 ............................. ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG 1524959 29 93.1 36 .G.....................A..... TCAATAATAAGCTTTCCTATTCTTTTTTCTTCACAA 1525024 29 100.0 37 ............................. CAACCAAAAACTTCGAATTTGAACTAAAATGCGTGGG 1525090 29 100.0 37 ............................. TCGCACTTATTGGGATTAAATTCAACAACAATATCAA 1525156 29 100.0 37 ............................. GTTGGATTGATGCAAAAGTTTCTTATACAGCTCTTAA 1525222 29 100.0 38 ............................. AAAATTGGAAAATCAAAAGAAGGACAAACTGGTTCAAC 1525289 29 100.0 36 ............................. AAAATCAAAGGCAACATCATAGTCACGTATATTATC 1525354 29 100.0 36 ............................. AAAAAACAAGAAACTAAGGAATCAATAGCAGAGAAA 1525419 29 100.0 37 ............................. TTAAATTCAGAAGAACAGGAGGTATTTAATAGTATTA 1525485 29 100.0 36 ............................. ATAGTTGTTTTTACTCCTGTTATATCTGTTTCTATA 1525550 29 100.0 39 ............................. TGATTGGGTTTATAAACAAATACCAAGATGGTTTAACTA 1525618 29 100.0 37 ............................. GTTCCTGCTCCTGTTCCTGTACCGGGTTGATTACCTG 1525684 29 100.0 38 ............................. TATTTTCCATAAACATTTCTAATTGACTTTTATTATTT 1525751 29 100.0 37 ............................. AAGGAAACTTTTTTATGAATGTTGAACCGGACGACGA 1525817 29 100.0 38 ............................. TAGTCAAATATTAAGTTTTGAGAGGGAAATCTTTATTT 1525884 29 100.0 38 ............................. TTATTATATATCTGTTTTGACTTAGCACTATTCTTATA 1525951 29 100.0 36 ............................. CAAAAGAATTATTATTATTGAAAGAAATAGTGTTTT 1526016 29 100.0 40 ............................. ATGACTAAAATCATAGAAAAAGCACTAGAACCAGCTAAGG 1526085 29 93.1 37 .G.....................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 1526151 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================== ================== 35 29 98.7 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : ATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAGAGTACTAATGAGTTACACTAGTACTTTATAACTATTTTTACATGTTTTAACTGTATAAAACAGCGGGTATAGTTCACACAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTATAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGAGCTTAACGCTTGAAATATAAGGTGTTGAAGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCATATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTATCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACGTAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1637482-1638629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1637482 29 100.0 37 ............................. CAAATTGCTGACAACACTGAAAGCATTATGAACGCTA 1637548 29 100.0 38 ............................. ATTGCTCTAGCGATTATGGGTGTTTTTCTTGTTTGGAA 1637615 29 100.0 35 ............................. TCAGAATATAATGAACTTGAAGTAAATAAGTTCAT 1637679 29 100.0 36 ............................. AATAAAAGATGGCTGGGTTTTAATAATTCCTTAAGC 1637744 29 100.0 38 ............................. TTGACCTACTTCATCCACTGCACCAGATTCTAATTCTA 1637811 29 100.0 35 ............................. ATACTTGGTCAATACATTTCAAAAGTTGCAACAGA 1637875 29 100.0 37 ............................. GGTGTTAGCCCTAAACCATTTCTAGCACCCGCATACG 1637941 29 100.0 37 ............................. TTTAAAAGGTCAACTTAAAGGTAGTAATTTTTTAATA 1638007 29 100.0 38 ............................. ATATTATCATCATTTAGCAAAGAATTTGCGTATTTTTC 1638074 29 100.0 37 ............................. TTTAAAATAAAATATATTTGCCTACCATCAACTGAAG 1638140 29 100.0 37 ............................. GGTGGTAGTGGAGAAGCTTCATCAGAAATTACAGCAG 1638206 29 100.0 37 ............................. TCAAATATCATTTTTTCAATAATTATTTTCATGTATT 1638272 29 100.0 37 ............................. CTTGTCAAGTATCGCCCTGTCAGCTGATTCCATATTA 1638338 29 100.0 36 ............................. GTACCAGTTCCACCAACACCGGAGCAGGAACAACCA 1638403 29 100.0 36 ............................. TGGTTTGCAAGGTAGCTCTAAAGACACTTGTTTAAG 1638468 29 96.6 37 .......................A..... AGCAATTCTGATATTTTTATTCTAATCATTTGAAATC 1638534 29 100.0 38 ............................. CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 1638601 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 98.9 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGTATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATACTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTATGATGGGAATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 1875709-1876591 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1875709 29 100.0 37 ............................. TTTTATAAAAGGTCTAGCAAATAATTGTTAGACTTTT 1875775 29 100.0 37 ............................. TCTATAACATTACTAGCAAAATCAAGGACTTGGTCTT 1875841 29 100.0 36 ............................. TGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTT 1875906 29 100.0 37 ............................. AATACAAAGAGAAACGAATTGATAAAATCGGGTGTAT 1875972 29 100.0 37 ............................. TAATTTTTACTATTTCGGTATCCTCTTTCAAAGACTT 1876038 29 100.0 35 ............................. TTAATCAATGTTATAACCTTCCTAGTTCAACATGG 1876102 29 100.0 37 ............................. GAAAATCAGTTTTTCGGGATTTTAGCTTCTGAGGATT 1876168 29 100.0 37 ............................. GGGCAACAGAAACATTACCAAAAATAATAAATAGCAT 1876234 29 100.0 36 ............................. TTATCTATTTCACTTATATTGTCGACATCCCACTCA 1876299 29 100.0 37 ............................. GATGGTAAAGTAGGTTCTGGAGCAGTAGGAAATATAA 1876365 29 100.0 37 ............................. GCGTTTTTTGGGGCTATGTTGTTGGGATTTTCTTTTT 1876431 29 100.0 37 ............................. TTTTTCAGTTGCGATGGATCTGGGACAGAAACACATA 1876497 29 100.0 37 ............................. TATGTTAAGTACTTCTTGTGGGGTCATAAAAAAACGA 1876563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ATTATTATATATCTAACTGACATTTAAGAAAAATATGATGTTTACTGACATTTTACTGACATAAAACTGAACATTATTTAAAGAGAGCATTGCTTATATTTTCAGAAGTTTCTTTATCCATATCGTTTAAAATATGAGAATATCTATTCATAGTTATTTTTATATTAGTATGTTCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAATTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGATGTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTATCCTTTAAAATATAATTATTTTTTAGCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAATTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAATTTTATGAATATTCATACTATAATTTAAATATAAGGAGATGCCCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAATTTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2189376-2189084 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2189375 29 100.0 37 ............................. GAAGTGCAGGAGGTAAAAGTACCAGTACCCCCAAAAC 2189309 29 100.0 37 ............................. AGTATTCCTTCTATTAAATTAGATTGGACTCCAATTA 2189243 29 100.0 36 ............................. TCATAAATATTCATTTTTTCTCTCCTTATTATTAAA 2189178 29 100.0 37 ............................. AGAGGCAACTAATTGCTTATGAGTCTGCTAGTCTTAA 2189112 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 99.3 37 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAATATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGCATTGAGAATATATAATAAGTATTATCAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : TTTTTATTACATTAAAAACAATTCTCCCAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATGATTGTGTTAGATATGGCTGAAAGTGATAATGTATATAAAAAAGAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 2242002-2240400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2242001 29 100.0 37 ............................. GAAAAAACAACTTTTTTATTATAAATATTAGACAAAT 2241935 29 100.0 36 ............................. TTTTTGGAACAAGGAAGTTGTATACCTCTGACATCC 2241870 29 100.0 36 ............................. TATGCCATTTTCCTGTTTTAACATATTCCATAAATG 2241805 29 100.0 37 ............................. CTTTATCATATCGAGTATCAATAACTACGCCTTTTGC 2241739 29 100.0 38 ............................. GATAATACATTAAGTAAAAAATTATCCATACTTCATCA 2241672 29 100.0 36 ............................. GGGCATAAGGGTATATCATAGTTACTACATCCTGGA 2241607 29 100.0 35 ............................. CTCTTTTTTGAACACAGATTGCTTTCTCTTGCTAA 2241543 29 100.0 37 ............................. TTTCTCTTATTTCTTCTCTATGACTATATACATCATC 2241477 29 100.0 36 ............................. ACCTTGTACAATCAGCTTCTTTGATTTTACAACATA 2241412 29 100.0 38 ............................. TCTGAAGTTAAGGCATGTCCTCTTTGGAAATGCTTTAG 2241345 29 100.0 37 ............................. TTGAGTGAATTTTTGCTCTTTTTTACTTGCTAATGTT 2241279 29 96.6 37 .....G....................... TTATATTCTATTTTTGGAAAGGTTACAATGTAATGGA 2241213 29 100.0 37 ............................. TTACCATACACAACTGCATATTTAAATCCCATACATC 2241147 29 100.0 36 ............................. AGGTCTGGTGTGTGATGACACACAATTTAATATTTC 2241082 29 100.0 36 ............................. AGGGTGAGGCTCAATTCAAAAACAAAAAATAAATTT 2241017 29 100.0 37 ............................. CTCTCACCTAATAAACTACCTGCTAACACATATTTCT 2240951 29 100.0 36 ............................. TTTATTCTAAGAAACTTTTTAATTCTAGTTCCTCGA 2240886 29 100.0 38 ............................. TGAGTACTATGGATTTATTGGAATATTAAAGAGTGTAG 2240819 29 100.0 38 ............................. CCAATTAGAATTGATTCAAATGTTTATTATTGCATGAA 2240752 29 100.0 38 ............................. TCACAAGAAGATAAAAACATTACAAATCGCCTAATAGA 2240685 29 100.0 37 ............................. ATTTTCATGTGTTTGATGCTTATGACAGACAGTAAAA 2240619 29 100.0 37 ............................. AGTATTACGCTGCATTATATTGGAATTGAACAGGATG 2240553 29 100.0 37 ............................. ATATTAACAGTTCCACCTTATCCTTTTATTTTAGCTT 2240487 29 89.7 29 ..................AT...A..... GTTTTTTCTTATTAAATAAAGATTGAGTC Deletion [2240430] 2240429 29 69.0 0 AC........T.A....CAT.T.C..... | A [2240414] ========== ====== ====== ====== ============================= ====================================== ================== 25 29 98.2 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : CCTTGAGATTGTAAAGTAACAAAGTGAAAATGTATAAAGAGGAAAAGAAATGGAAGGAAGAAAAGTATATAGATAAAGAGATATAACACGTATTTTGATTTAACTGTATAAGATGAAAAATTTGATGATTTTGAATAATTTAAAAAATTGTTAATGAAAATAAAAGACTTATTGAGCTAAGGTGCGATTACATAGGAAGGATGCAATAAAAAGAAAAAGGAATCATTGGAATAGAGAATATAATAAATACTTATAAGAATGTAGATGCTTTTAGTTTGTAAAATTATCCCATTTTTATTTTATAGTATGAGTTTTATGATATAATAAAAATATAAAAGTTTTGCAGTGAGCGATTTTTGTGATAAAGTAGGGTTTAACAGTTGAAATATAAAGCGTTGAGAGTGTATGATAACTGTTATCAATTGCACTATTGCTCGCTCACTGCAAATTTAGGAGAATTGTATATGTATAAGTATTGGAAATACTTAATTTATTTTGGG # Right flank : TGATTTTGTTTTTATATAAGAGAATTTGAATAATATGGAAAAAGATGATTAATAAATTATTAATTAGGGTATAAAATGATATAAATAGAATAAATAAGGGGTGGATGAAATGCTTGTATATAATAAAAGTTTTTATCCTAATGACATATTTCCAAGATTAGATTTTTCAAAAATAAAAAAACAGTTAAAATTGATAGATAATGACCTGTCAGATTTTGGAAGCATATGTATAATAGAAAAAGAACATTATACGATAAGTGTAAACAGTATAGGTGAAATAAATGTGTATTATGATTTAGAGTACGAAAATAAGGTGTATAGAATAGTTTATGAGATTGAAAAGTTATTTAAATCTCAAGTTGGAAGGTTTAGCATATCTACATACAGAAATTAATAATTAAAAAAGTAGAAATTAAAAAACTTAATACTAAAGATATAGATAAATATATGAGGTAACAGCTAGAGAGAGTTGTTACCCTTTTTAAATACTAAGTATATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 2601340-2600653 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2601339 29 100.0 36 ............................. ATTGCTAGTTCTGCGAATGGTGGAATAGTTGCTGGT 2601274 29 100.0 37 ............................. TACCATACTCGGTTGTTAACATTCTTACAATAGCACC 2601208 29 100.0 40 ............................. TTAGCTAAAGATATTGCTAATGGTGTATAAAAATTAAAAT 2601139 29 100.0 35 ............................. AAACAAGGTATAATAAAATTAACAGAAGAAACAAG 2601075 29 96.6 38 ........................C.... TCTCTGATTTTATGCAATTATATATTTCTCCAGTTCTC 2601008 29 100.0 37 ............................. CTACTACTTGGAACATCAAAAGGAGGTTGAAAATCTG 2600942 29 100.0 36 ............................. CTTTATTGTTTCAGAATAAATCCACTTCTCATTCTG 2600877 29 100.0 36 ............................. TTATAGCATCTGTATTTTGAGCAATCTCCATGAATG 2600812 29 100.0 37 ............................. TCAGGGTATGACTATTTATCTACTAGAGAAATTGACA 2600746 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 2600681 29 86.2 0 ................G....T.TA.... | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 98.4 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAATGTAGATAATGTTGAAAATTTAGGATTCAATGAGTTTAAACTTAAAACCGAAGAAGAAGAGAAGCGAGAACAAGAGAAAATAGAACAAGAAAAAAACAGTTATAATAACTACATTCAAAACAGAGTGGTTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGATTCAGGAGCAATTACACAGGAAGAATATAATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAAATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTGGGTGCTTTTATTCTGCTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTATTATTAATGTAACAAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTATTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGGAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 8 2847504-2847345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 2847503 29 100.0 36 ............................. TCTATCTGAATAACTTCTTATCTTGATAAATCTACT 2847438 29 100.0 36 ............................. AATGAACTATCTAAACCAAGGTCATAATTTAATTGA 2847373 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 100.0 36 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGCTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGTAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCTTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTATATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTATAGGTATGAACGTAATTTCACACTTAAAAACAGACTAAATACGTAGAATATATAGAAAAATTTACCTGTAGTTTTTGTGATAAAAAGCTCCTATTATTAATTTAAGCTAGATAAGTTTGAGGAAGTGACATAAATTGAAAGAAGGAATATATTATGTTGAATAAAAAATTACCAGATGCAGAATTAAAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 3365009-3362887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012309.1 Clostridioides difficile strain DSM 28668 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3365008 29 100.0 36 ............................. TTAGATTAAAAGAGATGGGTAATATTATAGAAGTTA 3364943 29 100.0 38 ............................. TGAGAATACCATTGAGGATAGCAGATTCATCTCCTAAC 3364876 29 100.0 37 ............................. TTTCTGAACCTCTACAATTATTAGGGCAACTCCATAT 3364810 29 100.0 37 ............................. CTATTATTAGATTAATTTTCTTATCTGTGTGAATACT 3364744 29 100.0 37 ............................. AAGTCAAAATTCATTGGAAAATTTGCAATAACGTCTT 3364678 29 100.0 37 ............................. TTACAATTTTAATTAAACAAATATTATATAAAATATA 3364612 29 100.0 36 ............................. AAGTTGATAACGTTGGGGCTTATCTGACTTATTACA 3364547 29 100.0 36 ............................. AAATTATTGACTTTTCTATGCTTATACTCATACTCA 3364482 29 100.0 36 ............................. AAGTCTGCTACTTCTATTTCTGCGCTTGGTTCTCTT 3364417 29 100.0 36 ............................. AAGTTAGTTTAAAAATATCATTTTAATTATTAAAGT 3364352 29 100.0 37 ............................. GTAACTATTTTTTCTACAACGTTAGTAGTTGTCTTTA 3364286 29 100.0 36 ............................. AGATTTAGAACAGGAGAAAAATCTATCCCATTAACG 3364221 29 100.0 36 ............................. TGATAAATCACGACCGTACCTTTTGTAAAATAGCAA 3364156 29 100.0 37 ............................. TTAGAAATAGAAGAAATTTTAAGATTAACTAATCTTT 3364090 29 100.0 37 ............................. GAAAATTCTGAGGATGATTTATGTACGATATGTAAAG 3364024 29 100.0 35 ............................. TCGAAAAAACTCTTAAAATCACTGATTCCGATAGT 3363960 29 100.0 37 ............................. CGGAGCAATGAATTTGCAAACTGGTTTGAACGGGTAT 3363894 29 100.0 37 ............................. CCCCTCGCTTTTTTATTTTTGTAGTATCGAGTCACTA 3363828 29 100.0 36 ............................. ATAAATTGTTGTATTTATCTGTTCAAAAAATAGATT 3363763 29 100.0 36 ............................. AAATTAACAAAATTTCGAACATATTTTCTAACTTGA 3363698 29 100.0 35 ............................. GGAGTACCAGAATAAAAATAAATCAAACCACTCAC 3363634 29 100.0 37 ............................. TAGCAACTATATACTCGTATGTTAAATCAAACTCTTT 3363568 29 100.0 37 ............................. GAACTTCGTTCTATTTATTCTAATTTATGATAACATT 3363502 29 100.0 37 ............................. AGAAAAGACAGAATAGATAAGATTGTTGAGAATGCTG 3363436 29 100.0 37 ............................. AATTGCAACATTAGATTTATTTTTAAATAAGTTATCA 3363370 29 100.0 35 ............................. TTACCCTGTTAAATAAATCTGTTAACATATTAAAC 3363306 29 100.0 37 ............................. AGAGTATTCACACATATTGTAACCTGTTCAGAATTAT 3363240 29 100.0 37 ............................. ATAAGTAAAACGGGTCCGAGCGCTGCTGCTAATCCTG 3363174 29 100.0 36 ............................. TGCGCAATAACATGCTGAAAACTGCAATTTCGAAGT 3363109 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGGCACAGTGTCAG 3363043 28 82.8 36 .........C.......-....GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 3362979 29 75.9 35 A...........TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAAACATCC 3362915 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ====================================== ================== 33 29 98.0 36 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : AAAATACACTTACCTACAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //