Array 1 365722-364960 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLR01000001.1 Campylobacter sp. RM9263 RM9263contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 365721 36 100.0 31 .................................... TTTATCAATCTTTACATCTTGTAGTAGCTGT 365654 36 100.0 31 .................................... CCAAAAAAGCAAAAATGAAACTAAATAAAGG 365587 36 100.0 29 .................................... CGCAAACGGGCAATTAACAAATAAAAATA 365522 36 100.0 30 .................................... TGAAAATGTATATACATTTGCTGGTCTTGA 365456 36 100.0 30 .................................... TCGTTTTATATTGACAACAGTAAAATTTTA 365390 36 100.0 29 .................................... CAAGCAGAGCAAGAAGCGGAACAATTAGA 365325 36 100.0 30 .................................... AAGCGGTTTTATTAGAGATGGAGAATCAAA 365259 36 100.0 31 .................................... TACAATAAAACAGCTGATGAAGATGAGTCTG 365192 36 100.0 30 .................................... TCAAATTTTGATCAATATTTTTTTCTATTT 365126 36 100.0 30 .................................... TTGGGACACTTGAAATACCATCAAGACCCT 365060 36 100.0 31 .................................... CTGCATATTCACCATATTTTACTTTTTCTAT 364993 34 80.6 0 .......................T--..T....GAT | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 98.4 30 ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Left flank : CGAGATTTTAATGCGTATTATGGTTATGTTTGATTTGCCAGTAGGGAGCAAAAAAGAGCGAAAAGAGGCTGCTAAATTTAGAAGTTCTCTTTTAAAATGTGGATTTTTTATGTTGCAATTTTCTGTATATGCTAGAATAGTGCGTGGATATGATAAGGCTGAGGTCATTACTAATAAGATAAAGTCTAAATTGCCTAGCAAAGGAAATGTGCGAATGATTACAATCACTGAAAAGCAGTATGCAAATATGGTAGTATTAAAAGGCGAACCAAAAAACTCTACAGAGAAACTAAGCTTAGAAAAAAGCTTATTTGAATTTTGAATATTTTGCCAGGATATACCTGGCAAATGGTTGCGATCTAAAAAGATCTTATTATAAGAATGCCCTTAGTTTTTATATGTTATAAGACCTAAATTATACAGTTTATTGATTTAAAATTTAATTAAGATATTAAAATTTAAATCAAAATACCATAAAATCATATCTATAAGAAGTTTCT # Right flank : TAAAATTCAAATATGGAACACAACTTGCTTAATGCTTATAAAATTAACGCAGGAGCAACAATGCAAAATGGATATTATCAAGCGACTGGTGCGATGGTGACGCAGTTTAACCGCTTAGATATCATCACCAATAATCTTGCTAATGTAAATACTAGCGGATATAAAAAAGATGATGTAGTAATAGCTGATTTTGAAAGAATATTTAAAGAGACAAAAGATACTTTGCCATTAGAAAATCACACTAAAGATGCTGCTAAATTTCTAAATAGAACACTAAATAGGGTTCCTCATATCAATGAAGTTTATACCGATTTTGGAGTAGGAGGCTTAAAGCATACCAATAATCCTTTAGATGTAGCTATTGGCAAAAACGATATATTTTTAGTAGTAGATACTCCAGCTGGTGTGCGACTGACTAAAAATGGCTCTTTAAATTTAGATAATGAGGGTTATTTGGTAACTAAAGAGGGTTATAGAGTTTTGCCTGCAAATTATGAAGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATAACATATAGAAACTAAGGGGGTTCTTATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 135758-136529 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLR01000002.1 Campylobacter sp. RM9263 RM9263contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 135758 37 100.0 35 ..................................... AAGAATGTCCTTTATCGACTTTAATTTCGCATGGT 135830 37 100.0 34 ..................................... ATTATCATAGGTGCTGTTTTAATTGCATCTGCTT 135901 37 100.0 36 ..................................... ACATTTGTGATTTGCTCATTTACACTTGTAGCTAAT 135974 37 100.0 39 ..................................... ATAGTAGAAAAATACCACTCTTCAAGCTCTTTAAAATCA 136050 37 100.0 35 ..................................... TCCATATATACAGTATCATCTTGTCCTAAAATACC 136122 37 100.0 36 ..................................... GCCTAAATTCTCTTTTTTATACTCGCTAATTGCCTC 136195 37 100.0 37 ..................................... CTAACGGATAAAGGAGTTGCGGTAGTTCCATCTTTTG 136269 37 100.0 36 ..................................... TAGTTTGAGCCTTTATGCTTTAGCTCTGTAATTCTA 136342 37 100.0 38 ..................................... AAAAGAGCCAAGTTGGGATAATTTAACAAAAGTCTTTA 136417 37 100.0 39 ..................................... ATGGATTTAGTTAAACCAGCCATAACTGCATAATGAGCG 136493 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.8 37 GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Left flank : AAAATCAAACCAAGCCAATACTAAATAAAGGGACTAAAATGCAACTTATAGCCTACTCAAAACTAGCAAGTAAACATTTTAATAAGCCATTTTTTAAGATAATGCTAATTTGCGGTAATAATCTTAAATTTAAGATATTTGATATAAAAAACGATGATTTAGCTCAATTTAATAGCACGATAGATAAGATTAATAAAATGTTAAATCAAGAGTTATTTCCACAAAGTTGCGCTAGTATAGCTGCTTGTATGCAGTGTGAATTTAAAAACTACTGTGATGATAGAGAATAATACCGGGGGTGCCAAAGGCAGTTGCCCCGATCTGTTAACACCTTTAGGTGATTTCAAACGCTAAAGAGTTAATCTGTAGTATAATTTGCATTTGTATTATAACTAAATTTTTCCACAAATTTGCTATTTTTAGCATTTTTTTTCAAAGTGGAAAAATTAATACCTCTAAACCATAGCCAAACGCCCATAAAATAGGCTAAATTTGGCTCA # Right flank : ACAAATCTAAACATCTAATCAAATTTAAATATTATCTACTATTATATTAAATTTATTATCAAAATAGATTAGCTAGTTAAAGATATAATTTTATAAATTTATTTTTGCAATAATATTAAAATCCCTCAAGAAGGATAAAATATAGCTCTTTAATCTGCGAATCACTCAAATGAGCAGTCGAAGAAGTACTAAGAAATCGAATAATACTATCTTTATTTAATGCATTTTTGCCAATACAAGCAGGATGAGCGATCAAAAACGCCCTACCTACACCAATCTCATCACCTAGCTTTCCATCACAAATAAAACAACTCATATCTAAATGCAATCGCCCTTCAAACTGCAAAATCATAGCATAAGCCTCAAGCACGACTCTAATAGGATTTTGGCGGTGGAATTTTTTCGCACAATTTTCTAATAAGTTATAATAAAACTCATCACTATCTTCTACATCTCGCAAATGATCAGCTAAAAGACGCATAAAATTTTGCCAAATTAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAATTATACCACAAACCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //