Array 1 312485-315543 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXZ02000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0043 NODE_2_length_548576_cov_24.708659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 312485 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 312546 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 312607 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 312668 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 312729 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 312790 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 312851 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 312912 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 312973 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 313034 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 313095 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 313156 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 313217 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 313278 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 313339 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 313400 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 313461 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 313522 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 313583 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 313644 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 313705 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 313766 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 313869 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 313930 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 313991 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 314052 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 314113 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 314174 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 314235 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 314296 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 314357 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 314418 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 314479 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 314540 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 314601 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 314662 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 314723 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 314784 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 314845 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 314906 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 314967 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 315028 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 315089 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 315150 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 315211 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 315272 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 315333 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 315394 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 315455 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 315516 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ========================================================================== ================== 50 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 332089-334559 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCXZ02000002.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0043 NODE_2_length_548576_cov_24.708659, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 332089 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 332150 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 332211 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 332272 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 332333 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 332394 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 332455 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 332516 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 332577 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 332638 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 332699 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 332760 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 332821 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 332882 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 332943 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 333004 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 333065 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 333126 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 333187 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 333248 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 333309 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 333370 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 333431 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 333492 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 333553 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 333614 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 333675 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 333737 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 333798 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 333859 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 333920 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 333981 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 334042 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 334103 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 334164 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 334225 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 334286 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 334347 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 334408 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 334469 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 334530 29 100.0 0 ............................. | A [334557] ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //