Array 1 234037-232260 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABXX02000002.1 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 strain DSM 20438 B_pseudocatenulatum-1.0.1_Cont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 234036 33 100.0 34 ................................. GCCCTCGTACCCCCATACTGGTAGGATGTTGGTG 233969 33 100.0 36 ................................. ATGTCACGAAACTTGACCGTGAGATGGCATCGCGGC 233900 33 100.0 33 ................................. CTGCTCGCGAGCGCCATCCTCTGGGCCGACAAG 233834 33 100.0 34 ................................. AACATTTTCCGTGAGGAAATGCGTATGGCATCCA 233767 33 100.0 34 ................................. CGTATTTCGCAATCACAAGGGACGACAACAAATT 233700 33 100.0 35 ................................. CGAGATAATAGCGAGGGGTATCAGCGTTCGAGGCG 233632 33 100.0 34 ................................. ATTCCGCATGCCGCTATTACGGACACGGCCAACA 233565 33 100.0 35 ................................. CGTCAGAACATTGTTCTTAGTCATCAAATCATTAA 233497 33 100.0 35 ................................. GTTAGTCACCTGCGCTTTTGCTGGATGAACTTATC 233429 33 100.0 33 ................................. AGTCGCGTGACGGTCAACAATTCCGGCGGATAC 233363 33 100.0 32 ................................. TACACCCGAGGTTGATTTTCCGGCGCGAGGTT 233298 33 100.0 33 ................................. AGGTATTTGCCGATGTCGAGGTTGCTGAAACTG 233232 33 100.0 34 ................................. ATTGCGTTCCGGTTCGACGTGCCCAGACGGTTCT 233165 33 100.0 33 ................................. TCATCGGGATTAACGCCGAGCCCTTTGACATGA 233099 33 100.0 33 ................................. ATGGCTTCGAGCACGTCAGCTGGAATCAGTCTC 233033 33 100.0 35 ................................. ATTCCAGATCTGCGTTTTTTGTCGTGATGATTTTG 232965 33 100.0 36 ................................. GCCCATAAATCCCAGCATTGCGCCCCGTACGCGCCG 232896 33 100.0 36 ................................. AGGCTCGCTCTATAGTTTTCGTCGAAAATCGGATAA 232827 33 100.0 35 ................................. AACACGATATCCAGTTGGGTAACGCTTACATGGAA 232759 33 100.0 35 ................................. AATAATCCCCAAGCGCAAAACCTGATTGTCGTCGT 232691 33 100.0 34 ................................. CTGACCGACGTGGCAATCGCCAAGCAGGGCGGCG 232624 33 100.0 33 ................................. TAAAAAATAATGGGGAGTATGACGTCATGACCG 232558 33 100.0 34 ................................. ATACACTTGTTCACACCGTGCAGACGCCGGATAT 232491 33 100.0 33 ................................. ACGCAGGTCAGCCCGATCCTCGACCGCATCCCC 232425 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 232359 33 97.0 34 ....T............................ GATACGATTAAGATGATTTTCGAGCGTCGTATCA 232292 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 27 33 99.8 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTTTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //