Array 1 78353-77963 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFG01000054.1 Desulfovibrio sp. A2 tab.contig.53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 78352 25 96.0 36 ........T................ TTGTGGGCCACATAGGCGGGCAAGTCGTTGCCGTTC 78291 25 100.0 36 ......................... GTGTGCGGCCCCGGCGTCTTCATCCGGGTGCGGTTC 78230 25 100.0 36 ......................... CAGGCGTTGCCGATCCAGGTTGTGCAGCGGACATTC 78169 25 100.0 35 ......................... GGCTGGCAGGGATATCCAGCAGTGAGGATATCGCT 78109 24 84.0 36 .T........A-.........C... CTCTGCCCCCGACGTTCGTAGCGTCGTGCGCTGTTT 78049 25 96.0 34 .........T............... CACATGGCCGAAAAGAGCGAGCTTTCCCCAGGTT 77990 25 92.0 0 ....................A..G. | A,T,G [77967,77974,77987] ========== ====== ====== ====== ========================= ==================================== ================== 7 25 95.4 36 CCCCCGCGCCTGCGGGGATAGGCCC # Left flank : GTGGAAGAATTCGAGGAGTGGGGCCCGCTGGAGTT # Right flank : GTTCAAAAAGTCACTGCTTCGGCCCTCATCTTGACTTCCGAAGTCCTCAAATAGAAGTCCATGAATATAGCAGAATTCCCATCCGGTTCTTAACCCTAGACAATCCACCCGAAAGGATACCTGTCGGACAAAGAAGCTGCATGAAACTTCCAAGGTAGGAATAGGGTAGGAAAAAGAAAAAGCCCTTATGGAAATCTTCCATAAGGGCTTGTCTTTCTGGTTGCGGGGGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCGAGCTGCTCCACCCCGCGTCACCTGCGGAATTCGGGTCCGGCGGCGTAGGCAGGGCCTTGCCGTCGGGTCGTTAGAAGTATGCCCGTCGCCCCCCGGTGTCAACAGGAAATCAAAAAAAGGCTGCTGATACTCGCCAACACACCGGCGCAACAGGATAAAAATCTTCACAAAGGTCTGCCGCCAGCGCCAGCATATCGGCACAATCACCGGCTCGGGCATTCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCGCGCCTGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 36-553 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFG01000055.1 Desulfovibrio sp. A2 tab.contig.54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 36 28 100.0 33 ............................ CTGGCCCTTGTACCGGCCAGCCACAATGCGCAT 97 28 100.0 33 ............................ CACCCGACTGGCCGGACTCTGCGCCGTCGCGAA 158 28 96.4 34 ..........................G. ACTTGACAGGGCGCTGCTTAAGCACACGGTGCCA 220 28 96.4 34 ..........................G. ACACGCTTTACAACTTCTGCGAAGCCCACCCTGA 282 28 100.0 33 ............................ CGGCAGCCGTCGTTCGCCTCGCGGCTCCCCCTC 343 28 100.0 33 ............................ CGCACAGAGAAGCTACAGGCCCTGATATCGAAA 404 28 96.4 33 A........................... CATTTGTACTGCGCGCATAGTCGTAGCTGGGTA 465 28 100.0 33 ............................ CTTGACGGCGGCGTGCCTGCTTGCCTTGTGCTG 526 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 98.8 33 GGGCCTATCCCCGCAGGCGCGGGGGGAA # Left flank : AACCGCGCCTTTGCCAAGCTCGTGCAGCGGCCAGCG # Right flank : ACTCTTGCTATCTATTTACGCATAGGTGATAAAAATAAGTTGGACTATCAGGAGATAGTCGGTCGTGGCATCCGGCTCAGGATCACACCATCCGCGTCTACAAGCGTACGCGGAGGCTCGCCGAGAACGCGAATAGCCTGGCCGGTGTCTTCGCCCCCATCGGCATAGACCATGACGATGGAGGCGTCTTCCACCTCCGCGAACCATCCTGCCAGCACTGTCCACACCCGTTCGCGCACCGCCCGAGAGAGGCGCGGGTGGGTGTATACTCCGGGCGACACCTCTAGAAGGCAAGAGGCCAGAAAGCCCCGGAAGCGATCAGGGACGTTACGAGTCACCACCACGGTCATCGGCATCGAACAACTCCTTGATGCGGTCGATCATGGCCGGGATGGTACCCGTCTTGCGCATGCGGCTGCCGGTCAGTCGTCGCACGTGCCGCTCAAGGGCGATATCTGGTTGTTTGCGCCAGAGTTTTACTGCCTCAAAGGCGCAGGGCA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGCCTATCCCCGCAGGCGCGGGGGGAA # Alternate repeat : GGGCCTATCCCCGCAGGCGCGGGGGGGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 50-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGFG01000076.1 Desulfovibrio sp. A2 tab.contig.80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 100.0 32 ............................. ATGGTGATCGTGGGGATAGATCCTGGCACGAA 111 29 100.0 32 ............................. TTTCTAAGGGCTTAGATATTCAGGGCATGTAG 172 29 100.0 32 ............................. CAACAGACTTAGCTGCTAAAAGTTCATTATCA 233 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTTCCCCCCGCGCCTGCGGGGATAGGCCC # Left flank : CCTGCGGGGATAGGCCCCCGGCGCAAATGCCCATCAACCTTCTCCCTTCG # Right flank : GTGCAGCCGTCGGCCATGCCCGCGTTGGCGTCGTTCCCCCCGCG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCCGCGCCTGCGGGGATAGGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //