Array 1 203-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000104.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================= ================== 202 48 97.9 29 T............................................... TTTAAAGATTGTATAAACTCAGAATAAAG 125 48 100.0 29 ................................................ ACACCTGGTACGACCATAAACTTATATCT 48 48 100.0 0 ................................................ | ========== ====== ====== ====== ================================================ ============================= ================== 3 48 99.3 30 AGTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : T # Right flank : C # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 700-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000110.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 699 47 100.0 30 ............................................... AGAAAATAAAGAAATCCTGAGAATTCGTCT 622 47 100.0 30 ............................................... ACAAATTCAATGTTTGCCTGTTCAAGTAGA 545 47 100.0 30 ............................................... GGTTATGCCTGAGCCCTGTAATATTTTGGC 468 47 100.0 30 ............................................... TGCAGGGCAATTGTGGGTTGTCGGTACGAA 391 47 100.0 30 ............................................... ACCTTTTTATTTACTACTCCGAAGGCTTCT 314 47 100.0 30 ............................................... GGATATACGGAAGCTCACGTCGGTTCTGTT 237 47 100.0 30 ............................................... ATAAGATTTTTAGTATATACAATTGTTGCA 160 47 100.0 30 ............................................... GTCTTTTTCATTTTCCAATGTCTGCATTTT 83 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATTTACAACTAGACCCACAGAATGAAGAAACAAAAAA # Right flank : CTTTAAAGATTGTATAAACTCAGAATAAAGAGTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 550-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000018.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 549 47 100.0 30 ............................................... ATATGTAATGAGCATTCCTCGTATCTTTCT 472 47 100.0 30 ............................................... TGTTTTATATGATGTTTAATAATTCTAAAA 395 47 100.0 31 ............................................... TATAGATTCTTATGGTATTCAATCTTCTGAA 317 47 100.0 30 ............................................... GGAAGAGACAGATATAAAGGATATTTGGCG 240 47 100.0 30 ............................................... ATCATTGAATTTGTATCTGGGTCTGGAGGA 163 47 100.0 30 ............................................... CGATTTTAATTCTGAATCTAAGCGTTCATC 86 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 7 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ACAAATGCTATACGGGCGAAAAAAGACAAATTTCTTATCCTAAAATGTTATGAATTCCGAACGATTTAACGCTTATAGAATTATGTGGGTAATGGTTTTATACGATTTGCCAACCGAGACCAAGGCAATGCAAAAAGCAGCCAATCTCTTCCGAAAACGCCTGGAAGATGATGGATTTTCTTTATTTCAGTTTTCTATCTATTTGAGGCACTGTCCGAGTAGAGAAAATGCAGAAGTGCATAAAAAACGAGTAAAAATGATGCTTCCCAAATACGGGAAAGTAGCCGTAATGACGATTACAGATAAGCAGTTTGGTGATATGGAAATATTCCATTCTAAAGTACGCGAAGATCCGCCACCTACTTACCAGCAGCTCGAGTTATTTTAGAAGTAGAATGAAAAAAATGGATTTACTCAGCCCGATTTATTCTTTTTTTGCTCAATTTTTTATTTCTAAAAACAAAAATAATCCTCTGTCTGTCAGAGGATTATTTTTTGAG # Right flank : CTAGACCCACAGAATGAAGAAACAAAAAAAGTTGTAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 40-317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000006.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 40 47 100.0 30 ............................................... ATAATTTGTGTTTTTTTAATTCTGTTTGTA 117 47 100.0 30 ............................................... TGATTTTAATTCTGAATCTAAGGGTTCATC 194 47 100.0 30 ............................................... TATTTCTTTTTTGTTTTCTTTTGAAGATTT 271 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATTTACAACACACCTGGTACGACCATAAACTTATATCTAG # Right flank : TTTAAAGATTGTATAAACTCAGAATAAAGAGTTGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 3208-3838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000078.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3208 36 100.0 30 .................................... TCACACCTTTTTGAATAAAACTACTCCAGG 3274 36 97.2 31 ..................T................. TGATAGGTTTTTGGTCAGTAAAATAGCTCAG 3341 36 97.2 30 ..................T................. TGATAAAGCGGTGCTTCTAAAACTAATCCC 3407 36 100.0 30 .................................... CATTTTCATAGCATTATATACTGACGCTAC 3473 36 100.0 30 .................................... TCAGTAATTCAGGCAAACTAACATCTTTTG 3539 36 100.0 30 .................................... ATGAGTTTAATTGACACAGAACATAAACGT 3605 36 100.0 30 .................................... TTTATTCAAAAAACAAAAGAAGCCACAGGT 3671 36 100.0 30 .................................... TTGATTATTAAGGATTAAACAAACATAAAT 3737 36 100.0 30 .................................... AAGTGTTATTTCTTTCTTTAGTGATGAGCA 3803 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.4 30 GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Left flank : CATAGGTGCTAAAATAGGTGCTAATAGTTTTATATATAAATATAATTTGTATGTGTTTTTGGTTATGCAAATATAACTAAAATATTATAAATCAACATACTTATATAAAATAAAACATATCTATTTTAACATAGTTCACTTCCCTCTCTCTCCGCAATAAAGGGTGTAAATCGAGTAGTTGCGAGATTTGCACCCTTTTTTACACCCAAAAATATTGAATGATTTTTTATTCCTTCTTCATATTCTTCATATTTTTCCCACATTTATGGCTTTAATTTTTCAGATTGGCTCAGAACTAAACTTTTGAGTTAAAAACTTCAATTTACATCTTACTCAAAACACTAAAAATCAAATACTTACAAAAAAATTCTTGCTAATTTCCACACGTGTTGTCCCAATAATACAACCCAAAAATATAATTTGCAACACTTTTCACACAAAAACAGAAAAATAAAGACCTCCCGATAAAGTACATCGGGAGGTTTTGCGTTAAATACAAT # Right flank : TGGCATCGGTTACGAGCGTGAACACGACGCCAATCAACACGCCAAAACGCTTGAAGATAAAAAAGTAACCAAGTTTGAAAGGTTTGTACAAGAACCAAGTGACAAGGACAAAAATCCAAGTGACAAGGACAAAAATCCAAGTGGCAAGGACAAAAATCCAAGTGGCAAGGACAAAAATCCAAGTGGCAAGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC # Alternate repeat : GTTGTGATTACCCTCCAATATGAGAGCAGTTCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 65745-65313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000079.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 65744 47 100.0 30 ............................................... GAGTTAAATCATCATCACATTTTTGAATAT 65667 47 100.0 30 ............................................... ATAATAATAATTATATCACCTTTTTGCACC 65590 47 100.0 30 ............................................... TTGTATGTTGTTGTATAGGTATGGAGTTAC 65513 47 100.0 30 ............................................... ATTTTCCCATTACATAAACAATTTCATTTT 65436 47 100.0 30 ............................................... ATGTTCAAATTTCAAAAAATCTTAAAATGG 65359 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATTTACAACACACCTGGTACGACCATAAACTTATATCT # Right flank : CTGAACGTATTTTGTACCTGCTGACCATTTATAATAAGTACTCCTTTTGTGGTAATGGTATTTTCTGAAAGGACAGAAAAAATGAGTTAATGAATATCCTTTTTTTTGTCGAGAAGTTTTTGACGTTCTCTCTTGAATTTTCTGTTGTTACGAACTTCAAATTCTATAATTATGTAAATAATCCACAACACAACAGCCCCTACAATAATATACCAATATTTAAATAGATACCATACGATACCTGTGAGCAGGGCAACAAAAACAATAATTACGCCCCAAATAAAACTTCCTAAACTATTAGAATTTTCCATAACTCAACTTTTTACATTATAAATTTACTTCCTTTTTTTATATAAAACCCAACGATAACCGTAGGAAATCAGTTCTTCAGTTGTAACCAGCCACAAAGTTACCAAAATTTGAAAGCTTATCACAACTATTTTTGTCAAATTATAAATACTTCATATCTTCGCATTGCTTTCAATGAAAATAATAATAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 40-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000096.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================= ================== 40 48 100.0 28 ................................................ AATACATTATGCTATGAAACACATAATA 116 48 100.0 29 ................................................ TGTCCTAAAAACATTGTGTTTGCCATACT 193 48 97.9 0 ...............................................G | ========== ====== ====== ====== ================================================ ============================= ================== 3 48 99.3 29 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAACT # Left flank : ATTTACAACGGTCGCTTCCTGTAACATTTTCATTATTTAG # Right flank : GTCGCTTCCTGTAACATTTTCATTATTTAGTTGTAAC # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:-0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 40-1242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000097.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 40 47 100.0 30 ............................................... ATCGGAACTTGTGGAAAGTTTCACGTATGA 117 47 100.0 30 ............................................... ATAACGGGGGGACTGACTCAAAGGACGAAA 194 47 100.0 30 ............................................... TTTTTTGCTAAGACAACGAAAATTAAACAC 271 47 100.0 30 ............................................... GTCGGTGGCTTTGTTGCCTTTTTCAAGTTT 348 47 100.0 30 ............................................... ACGACACGAGTAACAAAGTACTAAAATTTA 425 47 100.0 30 ............................................... AGGTAGTAATGAGGTATGTTATGTTAAAAC 502 47 100.0 30 ............................................... AGCATACGAAAAAGCCCCCCAAGGAAATTA 579 47 100.0 30 ............................................... TATCCGTAAGAAGTCCCGTGAGTCTAAGCG 656 47 100.0 30 ............................................... AATAGTCCTTTCCGTTCTCTTCCTCATTTA 733 47 100.0 30 ............................................... TACCCAATTGTGTTCTGTTTGAAATCCAAA 810 47 100.0 30 ............................................... CCAATTCCCGCAATAGCTTTCAGTGTATAT 887 47 100.0 31 ............................................... TGCTGCTGTTCTCACTCCTGACATTCTAGTA 965 47 100.0 30 ............................................... TACAACAGCCAAATATTTAAGCTCATCAGG 1042 47 100.0 30 ............................................... AATTCTTATGCTTTCATCGATAAAGCTAAA 1119 47 100.0 30 ............................................... TGGCATTAAAAAGACCTCCGTCATCTTTTG 1196 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 16 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATTTACAACGGTCGCTTCCTGTAACATTTTCATTATTTAG # Right flank : TAGACCCACAGAATGAAGAAACAAAAAAAGTTGTAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 39-239 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDOF01000099.1 Capnocytophaga cynodegmi strain Ccyn_ATCC49044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 39 47 100.0 30 ............................................... ATAGTTCAAAGATGCGCCGACACTATATTA 116 47 100.0 30 ............................................... GGGCTGTTTTGCAAACCTGTATCAACAATT 193 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 3 47 100.0 30 GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Left flank : ATTTACAACTAGACCCACAGAATGAAGAAACAAAAAAAG # Right flank : GGTCGCTTCCTGTAACATTTTCATTATTTAGTTGTAAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAACTAATCACAAAGTTACGGAAAATTGAAAGCAATTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA //