Array 1 3087-2605 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRZ01000152.1 Candidatus Hakubanella thermoalkaliphilus strain S34 HKBW3S34_000000000152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3086 37 100.0 40 ..................................... TTAGCCGGGATGTTCATTAGTTTCCCGGTCAGCTCTTTGA 3009 37 100.0 38 ..................................... GGGTTTAAAAATTATTTCAATCACCTTTCTCACCTCCG 2934 37 100.0 35 ..................................... TATCCTCGCAGACATATCCCGGATCCTTGCTCTCT 2862 37 100.0 39 ..................................... TAAAGAAAATCTTCATCCTCGTAGAGTTCGTAGCCGCCC 2786 37 100.0 34 ..................................... ATGCATCTCGGGCTCCCCTCCTTAACCTTATGGG 2715 37 100.0 37 ..................................... ACCACCTCGACCTCTCGGGGGGTCAGGACGACGCCCC 2641 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 100.0 37 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : GGCTTGAAAAGCTCAAAGCGTTCTTGAATATGTTCAGTGTTCATGCAAATAGTATAGCGTGAACACCAGAAATGATCAAGTTATTTTATGACAATTCCTAAGAGGGATTGAAACGGTAGTCCTCTGGATTAAATCCGTTTAACTCAAAATGGATA # Right flank : TTATTCTGGTTTTCTTGCAGGACAAGATCTTTCAGCAAAAATAGTCCTCTGGAAAGATGCCGAAATTTATAAGAAAGAGGCAAAGAGTTGAAATAGTCAATTGGGTGCCAAGACATGAATGATAGTAAATATCAGAAAAATCTAGAGAGTTTACCAAAACTTTGGGGGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTTGTGGTCCGGGTGCGGCCGATGAAAAGCGTCTGTTACCAGTATTCCACAGGCAGACTTTTGCATGGTCTTTTTCTGCATCTTGTAGAGAGAGTAAATCCCCCTCTGGCTCGGGAACTCCATGAGGCTAAAGGGCAAAAGCCATTTACTGTCTCTCCTCTGTTCGGGCATTTCCGTACGGAATCCGGGACAAAGAAGGCGGTGGCGGAAGAGGAATACTGGTTCCGTTTCACAGCACTTACCGAAGAGTGTTGTGAGGCATTGGTGAGGGTTTTCTATGGAGAGGCTATTCCCAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 2359-734 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRZ01000189.1 Candidatus Hakubanella thermoalkaliphilus strain S34 HKBW3S34_000000000189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2358 36 100.0 41 .................................... ATTACTTGATGCCCACAGCGGAGGGAGAAGACCTCGCCGAA 2281 36 100.0 40 .................................... CAAACAGTACGCTCCACCTAGCTCTGCGACACTCTTCACA 2205 36 100.0 41 .................................... CTTGAATAAAAATTGTCTCTTGGCTGTTTCAAAAGTGGTCA 2128 36 100.0 37 .................................... CTTACATTGAATTCGGAGAGGCTTCCGCCTCGGATGA 2055 36 100.0 38 .................................... CTGACCAAAGCAGGAGTTATCAGGTCGGCCTGCACTCA 1981 36 100.0 40 .................................... CCGATGATATAGCCGTCTGGCCAGTCTTTTTCTCTTGACA 1905 36 100.0 43 .................................... ATGCCACCTGTCTACCGCACTTGCGGCAGACGACTTTCACCAA 1826 36 100.0 40 .................................... AGTCAAGTCCCACAGAGCCATGTGAGTATAGATATGTACG 1750 36 97.2 41 .............T...................... GGTCAGCCGCCGGTTTTTTAACGAGGTACTCCTAGGAAGAG 1673 36 97.2 38 .............T...................... CTTTCTGCCAACTCAATTGCTTTCCCCTTGCTCACCCG 1599 36 94.4 38 .........G...T...................... GGGGATAGACCGGGACCAGGTGGCCCTGGAAGCAGCCG 1525 36 97.2 42 .............T...................... CACTACAGAGATAGAGATTTCCGTCCGCCGTCATGTAGAGCG 1447 36 97.2 42 .............T...................... AAAAAGGGACAAAACACCTTTTTCCGGCGGTGGTAATTATCG 1369 36 97.2 39 .............T...................... GCCCAAGTGGGCGAAGCCAGTGATCCTCTCAAGTTTTTG 1294 36 97.2 40 .............T...................... TTTAGTTTGCTGTCTATAAAGCTCAAAGCATCTCGGGCAG 1218 36 97.2 37 .............T...................... CAAATAATCGTACCTTTTCCACCCCGATCTTTTCACG 1145 36 100.0 38 .................................... AGTTTTTGAATAAGCTCTTTGGTATTCATTTTGTCACA 1071 36 100.0 38 .................................... AGGTACAGTATCTGGTGCCAAGGCATTATCTTTTCCTA 997 36 100.0 42 .................................... AGCATATTGAGGATGATCGTCATGAGCAAGACCTAGAAGACA 919 36 100.0 36 .................................... GTTATTCGAGAGACGTTATAGAGAGTGGGCACTGAG 847 36 97.2 42 .............T...................... TCTGGATTCCAGAGCGGGTGATAGAGGTCGCAAACCGAACCG 769 36 75.0 0 .........CT..A.G.G.....C..A......G.T | ========== ====== ====== ====== ==================================== =========================================== ================== 22 36 97.6 40 TGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : CGA # Right flank : CTTCTAAAGGACGGTTGGAATGATTAATGATTTTATAGTGATTATCTTCTTCCTTGGTCTTTTGCTGAATCTAGTAATGAGGGGATATATTTATCCTTATTTCGCTGTTCTTGCTTTACTTTTACTTATCTCTTTCAGAGTAACAGCAAGGTTACTGGGCGGAGGCTTGGGTCACCTTATCCGCGTCTCTTTTACCATCGGCTTACCTCTTCTTTCCCTGGCTATCTTGGCAATCAGATACGGCCAGGGTGACTTAAGACAAACATGGCTGGTACTTGGTTTGTTAACCGCCTTATTTTTGAGCATTTTAGGAGTTTACGTTATGATCTGGGGCGGATTTTCTTCTCCTCATGGCATCCTTTGGAACTTTCCTGCACTGCTCAGCGTCATGGTTTTTATTTTAGACCTGGCTTTGGGAAGGTATATCCCCCTTTCCTGGGCAGCAATAGCTATTGTGTTGCTGGTAATCTTGAGAGGTATAGGGAATCTCTTTGGGGGCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : TGAGAAAGGAGACTGATACCTAAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 846-206 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRZ01000299.1 Candidatus Hakubanella thermoalkaliphilus strain S34 HKBW3S34_000000000299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 845 37 100.0 39 ..................................... CTCTCAAGCTGCTCCATTACCGCTAACAGCTCTTCACAC 769 37 100.0 37 ..................................... CTCGTTTCACGAACTCCGGGAAACTATTTTATTATTT 695 37 97.3 39 G.................................... CTTACACTTGGGACAGATGCGGACTTCTTCTTGGTGTGT 619 37 97.3 38 G.................................... GGAGGCTAACCATGCCTAATAGCTATATGGGTCAAACC 544 37 100.0 40 ..................................... AGTGCGAAAGAAGGGTTGTAAGCGTAACGGGTTCGAGCCC 467 37 100.0 42 ..................................... AGTTGTTGTAGGCAAACAGCTTCCCTACGACAGGGCGGACGG 388 37 100.0 35 ..................................... TGGTTATTCATGGAGTACAGCCTCCCGTCATACTC 316 37 100.0 37 ..................................... CGGATGAGCGCCTCCCCCAGCGGGTCTTTTAGATTGG 242 37 94.6 0 G...........................A........ | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 98.8 38 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : TTGCGGGCTTCTTGCCAATTTACAAAACACCTGGTCAACGCGGTAGATGCCCGCAAGATGATAATTCCTGGTAGGAGTACATTTGGCAGCAGAGAGGGGGAAAAATCGATGCTGTGCTACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTATTCAAAGCCTATTATATTGGGCTGC # Right flank : CTTATTCTGCTTTTCTTGCAGGACAAGATCTTTCAGCAAAAATAGCCCTCTGGAAAGATGCGGAAATTCATGAGAGAGAGGCAAAGAGGGGAAACAGGAAATTGGATGCCAAGACATGAATGATAGTAAATATCACAAAAACCTACAGAGGTTACCAAAATTTTGAGCGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : GTGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1237-205 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRZ01000244.1 Candidatus Hakubanella thermoalkaliphilus strain S34 HKBW3S34_000000000244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1236 37 100.0 37 ..................................... GGGTGGGGCAATTTGAGTATGACAGTATCCCAGGTAG 1162 37 100.0 39 ..................................... TTCAGTAATCCACTTTTTTCTATTTCGGAAATCACGAAG 1086 37 100.0 39 ..................................... AGTTCTCTTCTGTTACACGAGACAATTCGTTCTTGCTCC 1010 37 97.3 40 .........T........................... CAACTTTCCAAGATTCAATCGCCAAGAACTACCAGAGGAC 933 37 100.0 40 ..................................... CAATCTCAATTATCTCAATAAGAACTTGGATCTGATCACC 856 37 100.0 43 ..................................... TCCCAGTAGATCCGTGGATCATCAGGATTCGCGCGATATTTCA 776 37 100.0 35 ..................................... ATCAGATACCGGAGATACTGGTTGCGGTTGCGGCT 704 37 100.0 38 ..................................... GCTCTCACCTTGGGAACATCAGCCTCAGGGATGTCTAC 629 37 100.0 43 ..................................... ACAAAATAATATCGCCCCCCCTTACCCTATTTACAACGTAGTC 549 37 100.0 38 ..................................... CCTGTTATCTTATCTCTCCTTATTTGGGCTTTTAGAAT 474 37 97.3 43 .............T....................... AGTACGGCTTCCTGAACCCGCGGACCACCGCGATGGGCCACTC 394 37 97.3 40 .............T....................... TTCACCGTGCCGGGCAATGATCGGTGCCAGCGAGGCTACT 317 37 100.0 39 ..................................... TCTACAGTCCAGAGGGCTGTAGTATAGCCAAGTTCTTGG 241 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.4 40 ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : TTGCGGGCTTCTTGCCAATTTACAAAACACCTGGTCAACGCGGTAGATGCCCGCAGGATCATAATGCCTGATAGGAGTACATTTGGCAGTACAGAGAGGGGCAAAAACCCGATGTTGTGCTACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTGTTCCAAGCCTATTATATTGGGCTGC # Right flank : CTTATTCTGCTTTTCTTGCAGGGCAAGATCTTCAGCAAAAATAGTCCTCTGGAAAGATGCCGAAATTCATGAAAAAGAGGCAAAGAGGGGAAACAGGAAATTGGGTGCCAAGACATGAATGATAGTAAATATCAGAAAAATCTAGAGAGTTTACCAAAATTTTGAGCGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 639-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRZ01000095.1 Candidatus Hakubanella thermoalkaliphilus strain S34 HKBW3S34_000000000095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 638 37 100.0 38 ..................................... TAAGAGATTCGAACTCTCAAGTCTTCAAGGTTCAGAAC 563 37 100.0 39 ..................................... GGCATGAAAACAACAGGCTGAAACGAAAGATAGTTTCCC 487 37 100.0 36 ..................................... CCTCCGTTCCTCAGGGTTAACCGACTTGAATACACC 414 37 100.0 38 ..................................... TGGACATAGCGTTTCCCCTAACAACACACTTTTTTATA 339 37 100.0 37 ..................................... ATTATCTATATGGAGCAGGAGCCGGGCTCGGCCGGGG 265 37 100.0 39 ..................................... CTTGCAAAGCTCGCGGATGAGAAGGGACTTGGCGAGCCA 189 37 100.0 38 ..................................... CCACCAATCCGGGGAGAGGTCTAATGCTTTCATTTTTT 114 36 83.8 0 ..............C..........-..CC..C...A | C,G [79,83] ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 98.0 38 ATGAGAAAGGAGACTGATACCTAAGAGGGATTGAAAC # Left flank : TTATGACTAATGTAGGGCCGGTTGCCCTGGAAATATATCCTGGCATCCGAATCTGCCAACTTGTTATCCAAGAAACTGTTGGAGAAGCAATCTATGAGGGTAGATTCAAAGACTATAAAGCTGGCCATTGAAGATGTCTTTTGTTTTCTTAGCAAGAGTCTCATCTACGAGAAGGAGGCTTACCGGATAGTGGCTGAGAGAGAAGAAATCGCAGATCCGGACAACAGTCCGGAGTTCCTTTGACACATAAAAAGAATATATGCAAACTTTCTGAATTTTATCTGTATATTTTTCGTCACCGTTCGGGCTTCGTGGTAATTTACAAAACACCTAGTCAATGCAACAGATGCTCGAAAGATCATAATACCTGGTAAGAGCAAATTTCGCAGCAGAGAGGGGGTGTAAAAATCGATGTTGTGCTACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTACTCAAGGCCTATTATATTGGGCTGCC # Right flank : AATAACATGATCAAGTTCAGGCATGATTTGGTTTGATGGTGTAGTTCCACTCACCATGAAAGGCGTCCTTGGTAAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGAAAGGAGACTGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //