Array 1 448523-449853 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJA01000001.1 Streptococcus agalactiae strain 250 NODE_1_length_724575_cov_172.422075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 448523 36 100.0 30 .................................... AAATAGTGCTTTAGGCTTGTATAATCTGAC 448589 36 100.0 30 .................................... AATTCCAGTTGGAATATGCGTCAAACGAAC 448655 36 100.0 30 .................................... CGTTGTCTCATTATTTGATAAATATTTATC 448721 36 100.0 30 .................................... TTCCCTTGCTAATATTAACTTAGGAGCAGC 448787 36 100.0 30 .................................... AAATACAAAAGGTGTTACTGTTTACAACGA 448853 36 100.0 30 .................................... GAAGTATACTACGGTTAGAGATTGGCTCAA 448919 36 100.0 30 .................................... ATTAGTCCTGTTGTTATGATGGATGATTAT 448985 36 100.0 30 .................................... ACAAACCTCTAATGGATAATATAGAACAAA 449051 36 100.0 30 .................................... ACACAATTAAACATAAAGAAGTGCTTATTT 449117 36 100.0 30 .................................... TCAGGAGATTGTGTGTACTCACGAATTTTT 449183 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 449249 36 100.0 30 .................................... AACCTTGATAGGCGTACTGTATGGATTCCA 449315 36 100.0 30 .................................... CTACTGTATTATCTGAAATAGTATCGTTTT 449381 36 100.0 30 .................................... TCTCGGGAAATGCAACTGATGCTGCAATCA 449447 36 100.0 30 .................................... AAATTGTTTTTGTTGTAATATAAAGTCGAC 449513 36 100.0 71 .................................... TCTCNNNNNGAGAGCTGTGCTGTTTCGAATGGTTCCAAAACAAATTGTTTTTGTTGTAATATAAAGTCGAC 449620 36 100.0 30 .................................... GCTAGCATGGCACAAAAATAGCGTTGGAAT 449686 36 100.0 30 .................................... TTAATAACTGTCCGTTTTGCCATTTCTTGC 449752 36 100.0 30 .................................... AGAGGGGAAAATATCAATGCCGAATGCTGA 449818 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================= ================== 20 36 100.0 32 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTAGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CGATGGTACAAAATCATTTGTTGGTACTGATGTTTTAAAGCTGTGCTGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCAAGATTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //