Array 1 216453-217004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048387.1 Spiroplasma sp. TIUS-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================ ================== 216453 27 85.2 48 .....CAA.C................. GTTAGATATATCTTTGTTGAAGTTAGGTGTATTTAAAAACATGCTACC 216528 27 100.0 48 ........................... ATTTGCTATTAATCCATTGAAATTTATTGCTCCAAAAAACATACCATA 216603 27 100.0 48 ........................... ACTGTCCAGGCTTTGATTGAAAGTCTCGGCTCTAGAAAACATACTACT 216678 27 88.9 48 .......A.............G.C... ATCATCGATTTTTTGGTTAAAATTAGATGCTGCAAAAAACATTTGAGA 216753 27 92.6 48 ...G.C..................... GTTATTTAGACTTTGGTTGAAAACTTTAGCATTAGAAAACATGCTGGC 216828 27 96.3 48 .......................C... TTTAGATATGTTATTATTGAAGCTAAATGATGAGTTAAACATTTCTGC 216903 27 100.0 48 ........................... ATCACCAATGTCTTGATTAAAGTTTACTGTTGAATTAAACATGTGAGA 216978 27 88.9 0 ...........T.........G.C... | ========== ====== ====== ====== =========================== ================================================ ================== 8 27 94.0 48 CATATTTGTTACATTTGATGTATTTCA # Left flank : CATAAATAGCTAATTTTTTTTACTAATAATTTGAATAAATACTCAAAATAGGCACAATTTTGTTTACTTATTGTCTAAAAAGCATTTATTTGTCTAATTACATTTTTTCTAGTTTATAAAAATGTAATGGAAATTGTTTCAAAGGCAGGTATGAAGGTGGTGTGTATGAAATATTTTAAGCTTAATCAGTGCTTTAGTTTACACATTTGTTTCAAATTTACGTTTAATTTGTGAATGTTATTATAGTTCTATAGTCTAGTATTAGAGAATTTAATAAGCAAAAGAGCAATCATTTGAAGCCAAATTAAATATTGACTATTGATAAAAACTCAAAAAAATTGCTGTGACTATTTTCTTATTTATTAAAGAGTAAAATTTGGCTTATTTTTATCTTCCCAGTTGTCAGCACCCAAATCGAACATTAAATAGTATTTAACCTTAGAAACGTTTCAAATACTTAAATCTTGATTAAAAGTAGTTGATGACATAAATATTTGAGA # Right flank : AATGTTGAATACCCTCTACTTTGTTGCTTTTCAAACTTCTAAATGAACTAGTTAAATCTGTGATTCCTTTTGGGAGATCCCTAGGCACTTTTTTTACATTTTTTGGAAACAAAATAGCTTTACCATTATGATTTCCAATTTTAATAATTTCTTCTGTATTTAAATCTGTTAAATCTAAATCAGTTGTACTTTTTCTATTACCGTTTTGGTCAATATAAATTGTTGTCTTTTGTTCTACTTCATTATTTTCAGATATATTAAAACTTTTTGGATTATTGTTTATATTTTGATAATTAATATTTTTATTTAAAATTTCAATACTGGTAACAGTTGAACTTGTCAATGTCAAAAATCCTAGTATATATACTAATTTTTTCATAATTATTATCTCCTTTAATATTTTTATTATATATAAATATAATAATAATTTATCAAATAAATTTATTAGTTGAGAAATTATTATTAAAATAATGATAGAAATATAAATAGTGGATAAAATA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATATTTGTTACATTTGATGTATTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.00,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 324957-325214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048387.1 Spiroplasma sp. TIUS-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 324957 36 100.0 36 .................................... TAAAATGAATTATGTATTCTATAGGACTCAATTTAA 325029 36 100.0 39 .................................... AGATATGTCGTCATTATTTGAAAATGTAAGAAGTTTTAA 325104 36 100.0 39 .................................... CAATATGGAAGCTATGTTTTATTATGCAGAATCATTTGA 325179 36 86.1 0 C...........GAG..................T.. | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 96.5 38 TCAAGATATTTCTTCTTGGGATGTATCAAATGTAAC # Left flank : GCTGATAATGCAGCTATGTCAAAAGTTATTAAAATAACTGTAAAGGCATTGATATTAATTCAAACAGATAAAGATTCTGATGAACTATATACTGGGGAAAGTTCAACTATTAATATTACAAATTTTGCTGATTTAACAAATGTAGAAATTACAGCTGCAGGATCCATAACTGCTACAAATGTTGCTGGAGTAATTACAATTTCAGCTGGAGTGACTGCTGGAGAAGGGACTGTTACAATTTCAGCTGATAATGCGGCTGCTTCAAAAATTATCACTATAAAAGTTGTAATGGATTCAGATTCACAATGAATTGACCCAGTAACTGGAGAAGTTAAATCGGGAGCTGCAATTCCTAATGGTGTGACTAAAGTTACAAAGATTGGTTATGATGAAAATGGAAATGCTCACCAAATGCCAACATCTATAATTGAAGTTCCTGACTTTATATCGCCTAAAATAAAGGACATATCTAAAATGTTTTACGGAGCTGAAAATTTCAG # Right flank : CAAATTATAAAACTTTTGCAATAATGTGTCCTATAAATAAGACATCTAAAATTCCGAAATTTAAGTAGTTTGGTTCTACTTATTTAGATTTCAATTTATATAAACACTTTTAATTAATAATTGAATATATCTCCTTGGAGAGACTGTTTCTTCCAACATACTTATTCTGCCTCTGCATCTCAAATTTGTTGTTTTTGAAATGACTAGTTGTTTTATATCTTAATACATATTAAACAAATAAAAAATGAAAAGAAAAAACACTGTAAATAACATAGAAAATTAGCAATATTTTGTAAATAAAGTATTGCTTTTTTTTTTTTTTTTAAATCATAATATCAAAAAAGGTTCAAATTTGTATGAAAGAAGACAGTATTTTAAAAAATAAAAAGATCAAAATAACTTCTATAGCTGCTGTCGTTTTGGTTATTTTAATTCTTTTATCTACATTTTTATCATTGTATTTTTTCTTATGAAAAGATGATAATAAAAAAACAACAACA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAAGATATTTCTTCTTGGGATGTATCAAATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //