Array 1 40267-40832 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQQ01000001.1 Alkalihalobacillus clausii strain J1TS1 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 40267 32 100.0 34 ................................ TTGGCCGTAAAACGTGATAGAGACACATTTCATC 40333 32 100.0 34 ................................ CTTGCGCGAACCTTGTAACAGCCACAATCAACTT 40399 32 100.0 35 ................................ ATTTATGTTAAACGACCAATATATTTGTATACCTG 40466 32 100.0 35 ................................ CTTTGCGCGTTTCCGGCCCTTTCAAACCATCCACC 40533 32 100.0 35 ................................ ACAGTGGATCCAGTCGAGGAGTTTGGATCAACAAC 40600 32 100.0 36 ................................ TCGTTGTATTCTGGGTAGGCGCTAACCCGCTTAAAA 40668 32 100.0 35 ................................ ATGAAGCTTCTGAAACGACACTTATAAACGAAATT 40735 32 100.0 34 ................................ CACAGCGGTGAAGGCAGATAATAATGCAAGGCAG 40801 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATCCCAATTATCGCGATTCAAATACTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAAAAATAGGAAGGAGCCATGTAAAGCCTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGAAAACTCGTATTTATGAGTGGCTGTTGGGACAGTGTTTGTGGAATTGGCGATTGCTTGCAAAGAAAGGCATCGATTTTTAACCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCGATTTTATAGTGCGAACCCCAAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGAAAATGTGTGTAAAAGTGGTGAAATGTTGTTAGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGGCT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACTTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTAAAGGAATTTCCCTTATGTTGACGTTTGGGCTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTGAGTTAGAGGCTCAGGTGGATTATTCGTACCACTGGCCGATCCCCCTTGTAGGGAACCAAGCTATTGTTTGACTGGAGGTGTTACAGCACCTTCAGTCTTTTTACTTTACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 48268-48500 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQQ01000001.1 Alkalihalobacillus clausii strain J1TS1 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 48268 32 100.0 35 ................................ GGGTTAGCAATGTTAGGAGAAGAAAACGAACAATT 48335 32 100.0 35 ................................ ATAATTATGTTGTTGTTTTTAACATCTGGACTTAC 48402 32 100.0 35 ................................ TTCGAAATACCAGTCGTTTTGAGAGTGGTATTGAA 48469 32 87.5 0 ...............GT..........A...A | ========== ====== ====== ====== ================================ =================================== ================== 4 32 96.9 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : AGAGTGGAGGCGTTAACGAGTCGATATGGCGGATACGTCGATTCTGATATGATATTCTCTGCATGTGAGATGGCGAGCTTGGTACAAACGACTTCTTCTGGCTTGTACTGGAGTGAAATAAGCCGATACTCGAATAGAAGAAAAAAGAAAATGGATTTTGGTGGTTTGCTTGGTGCGATGACGTTTGAGGGAGACATGTATCACTTTGCTCCATGGTTATACGCCGCAAGTTGTCTACATATTGGTAGAAATGTTACCTTCGGCTATGGTCAACTTGATGTTGTGTTTGGATAAATGAGAAATCTTGTTTGAGCATCATGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTAGTTTCCCATGATATTATAAAGGAAAGCGGCGGATTTTCCCTATTATTTATTGTTTCACTTCCAATAAATAGGGGGATTTCGCT # Right flank : ATATATTTAGATTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAAGGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTATTTCTGAAAGATAGTCTATGTTAACAACAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTTGACGTTCGGGCTACTGATCGTTGCATTGCTGTCATTTCACAACCACAAAAAATAATCCACCCTT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 60208-61381 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQQ01000001.1 Alkalihalobacillus clausii strain J1TS1 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 60208 32 100.0 34 ................................ CCAAGGTGAGAGTCTAGGAAAATGCGGTACAACT 60274 32 100.0 36 ................................ TTGCTATGGCCGGATACAAAACTAACGATATAATTT 60342 32 100.0 37 ................................ GCGCTAAAAGTGTTAGTTACGAAGTATCTTCGGATAG 60411 32 100.0 36 ................................ TTTTTGCTGGTGCCCTTTCCGGCTAATGTAGTTGTT 60479 32 100.0 35 ................................ ATAAAGGCTAAATAAAGGCTTCAAACGATTCATGT 60546 32 100.0 35 ................................ ATGTTTTCAAATTCTGTTTTGGATTTTCGCCTTTT 60613 32 100.0 38 ................................ TCTTCTCCTAGCATCAATAGCCCGAATATGGCTATAGT 60683 32 100.0 34 ................................ ATCGAGGTTGTACAGGTACCGACCAATCCCAAAT 60749 32 100.0 33 ................................ ATCCAAGGTTTTGTAGTTTTTGAGCATAAAAAA 60814 32 100.0 35 ................................ ATAAAAAAGTTCCTGTTCCTCTGGCGTGAGCTCAT 60881 32 100.0 34 ................................ ATGAGTGGCCAGCGTTGCCACTCCACCGTATGCC 60947 32 100.0 36 ................................ GAAGATGATTGAGGCAAAGGGCTTAGGAGGGATAAA 61015 32 93.8 34 ..........TA.................... GCTGCGCATCCGGTCAACTATTTCGTGCTGGGCA 61081 32 100.0 36 ................................ ACCTGAATAAACGCCATTGCCTTTGTAAATGGAAAC 61149 32 100.0 34 ................................ TGGTTTTTCTCACTTGTAAAGCTTGTCAGCGAGT 61215 32 93.8 36 ..G.......T..................... AGGCACGGAACGCCATTCATCTTCGCCAGGGATATA 61283 32 100.0 35 ................................ TTCCTTCGCAGTTTCTTACTGTTCAGCTTCATGCT 61350 32 96.9 0 ............A................... | ========== ====== ====== ====== ================================ ====================================== ================== 18 32 99.1 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GTGAACCAAGGGGCGATTTTGAGCTGATGAGGGAAGGGTATTTTCGAATAAAAGGATCGAGCATTGCGTGCTTGAAGATCTGGTTAGAGAAGACCTGGATTACCTTTGAAGATGAGACGAACAAGAACTCCAAACATTGAGTTTTGGAGTTTCTTTTTTTGGTGTTCGTAGTATTGAAAATTCGATTTTGGGATTAGGAGGATATTGGGGAGCAACTGTTTAATATGATCAGCCTAAAGAAGTTTGTCATTGACCATTAACGGCGTCGGAGTAAAAGTTGCAGGAAAAGATTTATTCAGACAAACGGCTTAAATCAGACGGTGCGAACCCCAAGCACACATAAAATCACTAGATCACCCGCACCAAAAAAGAGTCTAAATATGAGTAAATGTGTATAAAAATGTGAAAATGTTGTTCGTGTTCCATGATATGATGAAGGGAAAGAGCGACTTTTCTCTATTATTTGTGGTTTCATTTCCAGAAAATAGGTGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCCACATGAATCGACGTTCACTTGCGAAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAACTTTTGATAGGAACCTTCTTCGAATGCTTCTACTACTAGTTTTTCGACGCCAACTTGTTGCTCCATTAGGCTTTTTTGGAATCTAGGGATTTCTCCGACAACCAGTTTTTCGGGGCCGTTGCTGCCGACGATGCAAGGGATTTCTACCATTGCTGTTGGGTCGAAGTTCTTGATGGCGCCATTGTTTTCGACAATCATTAACATC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 67872-68304 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQQ01000001.1 Alkalihalobacillus clausii strain J1TS1 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 67872 32 96.9 35 A............................... AAAAACGTCTTAGCGTTATTGATGTTGAGGGAGAA 67939 32 100.0 34 ................................ TTATCAAAATTATAACAATATTTATTGGTGGGAG 68005 32 100.0 33 ................................ TGTTTCATCTCGACATTTCTTTGCTTCTTCGTA 68070 32 100.0 35 ................................ TAACGAGGTGAATCTAAATGGAAATTACATTGAAA 68137 32 96.9 38 ..............................C. TCTTCGTGTTGTTCTAATCGTTCAAGCCTCTCTATCTT 68207 32 100.0 35 ................................ CGTTTGGTTGGTTCTTCATCTTTTCGATGATTTTT 68274 31 87.5 0 ...T................-A.........G | ========== ====== ====== ====== ================================ ====================================== ================== 7 32 97.3 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CCGCTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCAGCGAACCTGCCCGCGTTTCGAACCAACCTGTCTGAACATTAATGGAGTGGGGACTCATGAAGGAGGCATCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGGTAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGCACTCAAATATGGTTAAATGTGTGAAAAAGTGTTAAAATGTTGTTCATATCCCATGGTATGATAGAGGAAAAGAGCGATTTTTCTCTATGATTCATCCATTAGTTATGATTCATCCATTAGTTTCCAAAAAATAGGGGAATTTCGCT # Right flank : GGCAACGTCCACCGATTGCAATATAAGGCGCTTGGTCGCACTCTTACTTCTACCATTTCCACGAGGCCACACGACCAATTCCTCTTGAGATATGAAGAAAGTGTCCACTTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAAATGCATGACTAAACAGCTGAACCGACCCGCTCGATGTGGATTTTTTGCTGATATTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAAAGATTC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 84487-85319 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQQ01000001.1 Alkalihalobacillus clausii strain J1TS1 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 84487 32 100.0 33 ................................ TCTTCGGTCTAAAACTGTTGTTATGGCTCGTAA 84552 32 100.0 35 ................................ ACACTTACAGTCAACAAGTTTTAAAACTTTTTTAC 84619 32 100.0 34 ................................ TGTACTTTATGTGCATCAAGGAGTATACGACGAC 84685 32 100.0 34 ................................ CCGAACTTGATGAGGCAGAACACAAAAATTTCTT 84751 32 100.0 36 ................................ ATGAATGCCTGCATTACCTAAAATGCCCAGGGCTTC 84819 32 100.0 37 ................................ ATTTTCTCCTTTATTCTCCAAGATTTACCGGGGTTAA 84888 32 100.0 35 ................................ TCAATCCCCACCGCAATCCCTTCTGGTATCCAACG 84955 32 100.0 33 ................................ GTAATCGTAAAACTCTTTAAACGTCTTATATAT 85020 32 100.0 34 ................................ GATCTGGTGGATGGGCGACGATCAAGTCACCGAC 85086 32 100.0 35 ................................ TTTCCTTCAAATTTCCACGCCATTTTTAGCGCTTC 85153 32 93.8 37 .........C.T.................... TCAGCGCAAGTCTTTCCGTAGCCCCTACGCTGGCTAA 85222 32 93.8 34 .........C.T.................... AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 85288 32 87.5 0 ........T...........A......A...C | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 98.1 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TCTCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTAAAGGAGAATGAATAGTCTATAATAACTTGTTTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCCAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAGCATGTGTAAAAATGGTGAAATGTTGTCTGTATGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTAGGGGGATTTCGCT # Right flank : CACGCTGCTGCCGTAGCAAATGAACTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGTGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCAGCAACCAGCGATGGTTATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAGATCGACACCAAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 97953-98246 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQQ01000001.1 Alkalihalobacillus clausii strain J1TS1 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 97953 32 100.0 34 ................................ TCGCTTACAGCGCGCCCTGAGCCTCCACATGAGC 98019 32 96.9 34 ...........T.................... TTTAGTTTTGGCATTAAACCAATTTCACACGACC 98085 32 100.0 33 ................................ CCCGCTCTATTTCCTGTAACGTAATCCAACAAC 98150 32 96.9 33 ...........T.................... TAACCGAAGAAGACCAACAGGATGAAGTTAAAA 98215 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 98.8 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : TAAAGTTTTATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCCCAAATTCACACATATATCAAACAAGAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGATCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGAAAATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAAGAGCGGCATTTTCCTATAATTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TTCGAATGTTGCCGTCTTGTTGTAACGCATGTTCGTCGCACTCTTCATAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGCGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGTAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGACGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGACGACTGACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAATT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 173055-173418 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOQQ01000001.1 Alkalihalobacillus clausii strain J1TS1 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 173055 32 100.0 33 ................................ GTACGGTCACGGGAGTCAAAGAGGGCACAGCGA 173120 32 100.0 35 ................................ AAAAACGGCTCAATTTAAAAGAAGATGAAATTGAA 173187 32 100.0 35 ................................ GCTAAGGCCGTGCAAGTTCTGGTCTTTACGGATGT 173254 32 100.0 33 ................................ TTTATGAGGTAGTTGCGGATAGTATTTTAAAAC 173319 32 96.9 35 ......T......................... TATTAAGTCTGCAATAGGATGGTCTTTTTCCCTAC 173386 32 93.8 0 ..............................TC | A [173412] ========== ====== ====== ====== ================================ =================================== ================== 6 32 98.4 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCACACATGAAATCCCAGGGAGGTTCGCACCAAAATCCACTTTTAATATGTAATAATGTGTGTAAAAATGGATTAATGTGAGCGGAGCCGCATGTTAAAATAGGAGAGAAAAACGAAATTCGCGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAAGTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCATCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGCTGTTTTTTTATTTATTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATAACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCTGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGAGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGACCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //