Array 1 1314841-1314276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006943.1 Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1314840 32 100.0 35 ................................ AGGACCTCTAAAAGAGGTAATGAAAGATGTCGATG 1314773 32 100.0 37 ................................ GCGATTGATGTGCATATGTCCGACTTAATCGCAGGCA 1314704 32 100.0 36 ................................ TAAATCGTCCAGCATTTCTAAAAAGTCAGGTAATAA 1314636 32 100.0 34 ................................ AATAATGTGAGCGGTCAGTTAAATGTCGGCACAC 1314570 32 100.0 34 ................................ ATTTGCCACGTTGTGAATATGGTTTTGATACCAT 1314504 32 100.0 34 ................................ CATTTATCACCGGACCAAAAGGCATAAGACGGAT 1314438 32 96.9 33 ........T....................... AAGGAAAATCGCACGCATTTAAATGCGTTGCAA 1314373 32 96.9 34 ........T....................... TGAATGGCTAGTTGTGTGACTGCTACAACTTAAA 1314307 32 81.2 0 .............C.......CA.C..A...T | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 97.2 35 GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC # Left flank : TCTCGCAAAGGCTTAACCATTCAACGCTATAAAGGATTAGGCGAGATGAACCCGGAACAATTATGGGAAACCACGATGGATCCGGTCGCTCGCAAAATGTTGCAAGTAAACATCACCGATGCTATCGCTGCCGACAAACTTTTCAGCACCCTAATGGGCGATGAAGTTGAACCACGCCGCGATTTTATCGAGACTAATGCGTTATATGCCCAGATTGATGTGTAGTTTAAAATTAAGATCCTCTATTGAGAAATAGAGGATTTTTTATAAAAATTATCTAAGTATCCTACAAATACCATTGTAATATATGAATTCGCTAACCTATAGTTCTCATTAAAATTATAGTAGGTAGCGATTTTATTTATTCTTTTATAATCAATATGTTATAAATTTTACCTTAAATAATTTTGATTCTGTTATACTAGAGCAACTCGTTGTATAAGAGCCTAGCGAAAATGGCACTAATAGGCCTTGTAGCATAATGATTTCTTATATAGGGA # Right flank : TTCCTATTTCTACCCCTTCTAAAATAAAACAAGGATTTTTGTTTTTCTATCCAAAATGGTACACTTCATTGAAATGAATCATTAAGGATTTTCAAAATGAGTAGTACAGAATTATTAGTCAATGTTACCCCAAGTGAAACAAGGGTTGCGTTGGTTGAAAATGGGCTATTAAAAGAGTTGCATATTGAGCGTGAGGCCAAACGTGGCATTGTGGGGAATATTTACAAAGGGCGTGTAACTCGAGTATTGCCCGGAATGCAATCTGCTTTTGTGGATATTGGCTTAGAAAAAGCGGCTTTTTTACACGCCTCCGATATTGTTTCTCACACTGAATGTGTTGATGAAAATGAGAAAAAGCAGTTTGTAGTAAAAGATATTTCAGAGTTAGTGCGTGAAGGGCAAGACATTGTTGTTCAAGTGGTAAAAGATCCGATTGGCACAAAAGGTGCGAGACTAACTACTGATATTACCTTGCCTTCTCGTTATTTGGTTTTTATGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC # Alternate repeat : GCAGCTACTTTCGTGTAGCTGTGAGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1496445-1496080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006943.1 Mannheimia varigena USDA-ARS-USMARC-1296 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1496444 32 100.0 36 ................................ CGCTTGAACGCCTAATTTTTGCAGTAATTCGCTGGA 1496376 32 100.0 34 ................................ GTCCACTTCGTCAAAGTCTTCACTCATCAACTCC 1496310 32 100.0 35 ................................ CAGGCTGTATTAGGTGTGGCATTAATTGGAGCTGC 1496243 32 100.0 35 ................................ CAAAGCTACGATGAAGTGTTGATTAAACTCAAAGA 1496176 32 90.6 33 ........G.T.G................... CCATCACTTAAAACGCCAACAGACCAAGAAATA 1496111 32 96.9 0 ............G................... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.9 35 GCAGCCACCTCCACGTGGCTGTGAGTTGAAAC # Left flank : AGCAAGGCTATGATGATGTTGATTACCTACGATATTTCTTTCGATGACCCCGAAGGGCAGAAACGCCTTCGCTACATTGCGAAACATTGCCTTGACTACGACGTTCGAGCCCAATATTCCGTGTTCGAATGCGATGTTACTCCCGACCAGTGGGTTAAACTTAAACAAAAACTGCTGGCGACTTATAACCCTGAGCTTGACAGCCTCTGCTTTTATCATCTCGGTAGTAAATGGCGTAACAAAGTGGAACACCACGGAGCGAAAAAAGCGGTGGATTTGTTCAAAGATACACTGATTTTGTAATATGTAGTACATCGCTAACCTGTTGTTCTCACCAAAACAGGGGGAGGTTAGCGATCATCAAAGTTCTTTAATAATCAATAAGTTATAAAAAGTATTAGCTCAATTTGAATTGTGCTATACTAAAAATACTTCCTATACAGGCGTTTAGCGAAAAGGCGGTAACAAAGCCTTGCAGCACAATGCTTTTGCATATAGGG # Right flank : AACCCCTTTTTCTCTATCTGTTAAAGACATAAAAAGTGGTTACCTTCACGTAGCCATAAGTTGAAATCTTGGGATTCAGATATAATTTCTTAGACATTTTGTAGCTATTTTCATGTCACGATAATTGGAAATATAAATAAAGGTGCATTGCTGCACCTTTATTACTATTATTGAACCGTTGCTTTAGTACGCGACTTTTTCACTTTGATTTCCGCTTTCGGCAATACTTCAATTCCCATCGGTGGGTTTTCAAGAGCAATTGCAAGCACTTCATCAATCGTCTCTACGGCGTGAATACGTAATGCTGCTTTGGCATTTTCCGGAATTTCCTCCAAGTCTTTTTCATTCTCTTTTGGAATAATAACTGTGGTAATACCACCACGGTGGGCCGCAAGTAATTTCTCTTTTAAGCCGCCGATTGGCAATACTTTTCCACGTAGGCTGATTTCGCCTGTCATCGCTACTTCTTTACGAACAGGGTTACCTGTTAGGCTCGAAAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTCCACGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCACGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //