Array 1 1621-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCV01000003.1 Amylolactobacillus amylotrophicus DSM 20534 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1620 28 100.0 33 ............................ TATTGCAAAGACCGCTACTGAAGCGCGGCCGGT 1559 28 100.0 33 ............................ TGTTGTAAAAGCTAACGCCGTTAATAGGTTAGA 1498 28 100.0 33 ............................ CGGCGCCGGCTACTATGTATACTTTGAACCGTT 1437 28 100.0 33 ............................ CGGTAGACCAAGTTATTATTTTGGTGAAAAAGG 1376 28 100.0 33 ............................ CGCGGTAGGCCGTGCTAGGTATGACAACGGCGC 1315 28 100.0 33 ............................ TCTCATAGTGCCCGTTTTTCTTATATATTGCTT 1254 28 100.0 33 ............................ TCTCCACCACTCGCTTAAACTTCGTCTCATCAC 1193 28 100.0 33 ............................ CACTAAAAGCAGTCCCGGTACCATAAGATATTG 1132 28 100.0 33 ............................ TTGTATTATATAAATATAGAAGAGAGCAGGAGA 1071 28 100.0 33 ............................ CCATTCCTCCAAAACGAAAAATGGTCGGAGTTC 1010 28 100.0 33 ............................ TACATGGTTTTCACAAACTCATACATTGTTCTC 949 28 100.0 33 ............................ TATGTTACGCCATCATCAATATCATCAGGGAAC 888 28 100.0 33 ............................ TAGTAAGGGCATCGTCAGAGCTCGCAAAGATGG 827 28 100.0 33 ............................ TCTTTTTAGCCAATTGCACTTGCGTAATGCGTT 766 28 100.0 33 ............................ TCAACATTAACCTTAATCTTTGTCATTTAAAGC 705 28 100.0 33 ............................ CACTCAGGAGTACCTAATAAAACAGATTAGTCC 644 28 100.0 33 ............................ TTATCCACGGGCGTTGCGTTGTCATCAGGATTA 583 28 100.0 33 ............................ CAGGCTTGTTATTTAAGGGGGTTGGTTGGCTAT 522 28 100.0 33 ............................ TACTGATTTGTCTTGTGGCGTTATCAGCGTTGC 461 28 100.0 33 ............................ TTTATCAAAGAGGTACCCACAAAGAGAGGATGA 400 28 100.0 33 ............................ TTAAAAAGGCAAACCTCAATCTGGAGGTTAAAA 339 28 100.0 33 ............................ TAATTTCTGTCAAACAATTTATATTAGTTGTTG 278 28 100.0 33 ............................ TTCATGAGGGTGTAGACCGTTCGACAGTCAATG 217 28 100.0 33 ............................ TCATTTCATCTTGGCAGGCTCTGCAGGCTTGAT 156 28 100.0 33 ............................ TTGTCTTCCCCCCTTGGCGTAATTTTGAAGTTT 95 28 100.0 33 ............................ TGCCGCATCGACATCTACCTTGTTTTGCGTAAT 34 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 33 GTTTTCCCCGCACAGGCGGGGGTGATCC # Left flank : TGATACTGATAAGATTATTGCTATTGGTATGGTCAAGATTAATCACGGTGTTGCTGACAATCCAAAACAAATTCTAATTAAAATTGACGAGCCACTCTCAGATGAAATAATTAAATTAACTGGATATACAAACAAATGGTTGGAGACTGAAGGAGTTGATATTGTTAGCGCATTAAGTAGATTTGTAGATACTGTTGAAAATTTACCAATTATCGGATTCAATGTAAACTTCGATATCAATTTTATCAACAAAAATTTGATTGAAAATGGTATGTTGAAAGTAGAAAATGAAATTACTGATTTGAGAACAGTGGTGAAGAAAAATGAACTGTTTTTGAATAATTATCGGTTAGAGACAGTTCTGGCAAAATATGGTATTGAAAATATTAACCCACATCATGCGGAATCAGATGCGCTGGCAACGGCAAAGCTTGCGGATCAACTCATAAAAAATAGTTTACTATATTTTTAGAATGTTGATTTATAAGGGATCTTTTAGT # Right flank : CCACTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 51822-50208 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZCV01000008.1 Amylolactobacillus amylotrophicus DSM 20534 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51821 28 100.0 33 ............................ CACTAGTGGTTCTTGTAATGGTAGCTTGACCGA 51760 28 100.0 33 ............................ TAAATAATTTCCTCTACTCTATCAGACGTCTGT 51699 28 100.0 33 ............................ CCATCGCTTCCTATTATACTTTTAACACCATCG 51638 28 100.0 33 ............................ TGATACATTGAACCCGTCTGATTTAATGAAACA 51577 28 100.0 33 ............................ CATGGTCGTTTTAACGGCGGACGCCGTTATCGA 51516 28 100.0 33 ............................ TAATTCCTTTAAATCGTTATAGCCCGTGTAGTC 51455 28 100.0 33 ............................ TTGCTAATCCATGGCATATCAATACCGACAATT 51394 28 100.0 33 ............................ CTAGTATCTAAACCATAGTAGTTTAGTGTTTTC 51333 28 100.0 33 ............................ TAGATATTGTAAGAGAGATAGAGAGAGGGAGAA 51272 28 100.0 33 ............................ CGTAGCTTAAAACCTGCTGAATAGTGCCAGACC 51211 28 100.0 33 ............................ TCAAGTTAAAAGCTGATGGTTCAAAGGTGGATA 51150 28 100.0 33 ............................ TCCGCGCAATGATTTAACAGGTGCAGAGGTTAA 51089 28 100.0 33 ............................ TCATACGGGCCGGCGTGTGTGTAGTCGCGCGGG 51028 28 100.0 33 ............................ TCATGATAATTCAAAAGTTTTTGAAATGTTTAC 50967 28 100.0 33 ............................ CTCCAACTAAAAATTGGATTATCGGAGTTAAAA 50906 28 100.0 33 ............................ TCAGGGGTCTAGCAGCAAAGCCACGGCTCAGTA 50845 28 100.0 33 ............................ TCGCCAGAGCATTTCTAATTTTCGTGTTGGCAG 50784 28 100.0 33 ............................ CAGCAAGCAAGGCTATTATCGACTATGCGTTTA 50723 28 100.0 33 ............................ TTACAACCGCTTTTACGGCATTTATGCATAATC 50662 28 100.0 33 ............................ TAAGTGTTCGATAAATTTACCTAGATTTTCAAA 50601 28 100.0 33 ............................ TTGTGCTAGGCTGGTTGCAGATATTTGTAAGCG 50540 28 100.0 33 ............................ TACCGCCCACTTGATGATGTGATATGCCTTGTC 50479 28 100.0 33 ............................ TCCACTCAACACCACCAATTCTGCCTTGCACGA 50418 28 100.0 33 ............................ TATTCATTATCTTGCCATGTGTAATATGCATCA 50357 28 100.0 33 ............................ TAGCACAGTATAAATAATTAGGAGGTCATTCAA 50296 28 89.3 33 .........................CTG ATCAAGTTGAGTGATAAATTTGCGGTTTTCAAT 50235 28 96.4 0 ..........T................. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.5 33 GTTTTCCCCGCACAGGCGGGGGTGATCC # Left flank : ATCCTGCCGCATCGACATCTACCTTGTTTTGCGTAA # Right flank : TTGGTGCCGGAATATTTCAAATCTGATTTTTTAGTTCCCTGTATATACGGGGTGATTCATACACCGATAGCTTATATCAGTCAGCAATTACAACTTATGAACGTTCTAAGCATGAAGTTCAGTCCTGGCAAGTTTAATTAGTCAAAGAAATATTTGCGATTATACTTTAATATACAGTCATTATGCATATTAGGGTATTTGTTCTCACTAGGAAATGTGTATTAATGCTATAATACTAGGGTGGTTTTCCCCGCATACGCGGGTGTGATCCTGTTATGTTTGCTAATTTAATACATATCCAGGTTGTATTCCCCGCATTTGCGGGTTTTTTTGTTTTCCCACTAATCCAACACTTCCCCCAATTCCAACGACCAAACAAAAAAACACTAATCTAACCGATTAGTGCCCCAAAGTCCTCAAAATATTTAGCAAGGTGAAAATTTTAACAACGTGACGTTAAGCCGCTTTCGTCGCTGACACAAGAAGCATCATTGGTCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //