Array 1 979986-981478 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPX01000001.1 Salmonella enterica strain 16E080 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979986 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980047 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980108 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980169 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980230 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 980291 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 980352 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980413 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980474 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980535 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980596 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980657 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980718 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980779 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980840 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980901 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980963 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981024 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981085 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981146 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981207 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 981268 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 981329 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981390 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981451 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997610-999574 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPX01000001.1 Salmonella enterica strain 16E080 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 997610 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997671 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997732 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997793 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997854 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997915 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997976 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998038 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998099 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 998160 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998221 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 998282 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 998343 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998404 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998465 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998526 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998587 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998648 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998709 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998770 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998831 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998893 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 998954 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [998996] 998996 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999057 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999118 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999179 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999240 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999301 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999362 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999423 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999484 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999545 29 96.6 0 A............................ | A [999571] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //