Array 1 15090-6102 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPY01000040.1 Methanosarcina mazei strain 3.H.T.1A.1 scaffold48_1_size30679-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 15089 37 100.0 37 ..................................... AGTTATAAATTATTCCGTCTGTGTTGTGGTAGCCCCG 15015 37 100.0 35 ..................................... AGCATTTCGATTAATGCAAGTGCTACATAACAAAG 14943 37 100.0 35 ..................................... GGAGGTATAGGATGGCATCCGAAGAAAAAGAGTTC 14871 37 100.0 34 ..................................... TATACAGGTTTTTATAATGTGGTATATGTAAGTT 14800 37 100.0 36 ..................................... AACACTTTTTTAGCAGAACTGTAAACCTTAGTTGCT 14727 37 100.0 36 ..................................... TACAATTACGTCCTTACACAGTTCAACAACGTAAGA 14654 37 100.0 35 ..................................... TTTTCACCGCTTTTTAAAGACCACTTTCTTGTACC 14582 37 100.0 38 ..................................... GTATGTTACTCGCATCACCTTGCGAGATTTTTTCTAAG 14507 37 100.0 35 ..................................... CTGCGTAGTTGGTGAGGAATAATGGTCGGCATAGA 14435 37 100.0 35 ..................................... TAGAAAATCAGGAAGTAGAGCCATTACCAAAAATC 14363 37 100.0 37 ..................................... TCACTTGAGACCATAACTTTGTTTGAGGTCCCCGCGT 14289 37 100.0 35 ..................................... CTGGATTCATAGTGTCTTTAAAAACATGTACATAA 14217 37 100.0 36 ..................................... TTCGATTATTCCAGGCTTCTATATTTTGACTTTCGA 14144 37 100.0 36 ..................................... ATTAGTAACAGTAAAGCATATAGTATGTTAAAATTA 14071 37 100.0 37 ..................................... TTAAGAGTATATTTATTACCGATTTCCGGATATATGC 13997 37 100.0 37 ..................................... ATTTTTGCGATAATACCATGCTGTCCTGAATCGAATT 13923 37 100.0 33 ..................................... ATCAGTTCCCGGTTCATCTCAGAATTCAGTATC 13853 37 100.0 35 ..................................... AACGTGTTCACCACGAATTAGCTGACCAATATGAA 13781 37 100.0 36 ..................................... TAATAAAGTTGCATGTCATCTACCTTATGTATTTCA 13708 37 100.0 37 ..................................... CTTTTAGGAGTGTTTATATGAAATGGCATTCTATTAT 13634 37 100.0 34 ..................................... TTCCAATGCCCGCAGATTCCGTTGCATATGTAAT 13563 37 100.0 36 ..................................... ATCCCCGTTCCGGCATGGATTAGGGATGAGCTTAAT 13490 37 100.0 36 ..................................... CACTGTTGCAGAAGGTGGAGCAAGCGACATTGTAGC 13417 37 100.0 35 ..................................... TATTCTTGTAAACCATGTTTGTATTACTCCATTGC 13345 37 100.0 34 ..................................... TCCATTCCAACCAGCATCAGTTAAACATATTATG 13274 37 100.0 37 ..................................... AGTATTAAAAAGGCATTATTAGAAAATTGAAGTTCAA 13200 37 100.0 38 ..................................... TTAAAATCCCTTGTAAACTCGTCAATATCTGATACAAT 13125 37 100.0 35 ..................................... AACAAGAACTTAACAGCATCAGAAGACAGCTTAAA 13053 37 100.0 35 ..................................... TCTGAGACTCATTATAAAACCCAAATGCGAATTTT 12981 37 100.0 33 ..................................... CTCGTACCTTATAAATCCCAAAATCAATATTTT 12911 37 100.0 36 ..................................... CATTTCCAACGGCGTATTAATTTTTTCATGTATGTG 12838 37 100.0 37 ..................................... CCTCAAACTTAAACTCATCCAACCTTCTCCACCACTA 12764 37 100.0 37 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATAGCT 12690 37 100.0 35 ..................................... TTTGCGTAGATCTTGAATCGTTCACAGTCAATAGT 12618 37 100.0 36 ..................................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGACTT 12545 37 100.0 35 ..................................... CAGAGTTGTAAGTTACCCCGGAGGTTGCAACTGCC 12473 37 100.0 36 ..................................... TGGTTGATGTATGCGGTTCTGCCGGGAACATAATAA 12400 37 100.0 38 ..................................... AGGCGGAACCATATTCGGAAAAACTCCCCTTGTCAATG 12325 37 100.0 35 ..................................... TCAACCATTAAGGACAATCTAATAAACGGATTAGC 12253 37 100.0 37 ..................................... TACCGTTCATGGTATCGGACATATCAAAGCCAGCAAG 12179 37 100.0 34 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGA 12108 37 100.0 36 ..................................... CTATTGTGAACCCCCGCAGACCTAAGAGGATTTTCA 12035 37 100.0 37 ..................................... TTTCCACAATCAACATACCCCGTAAGCCCATCAAACT 11961 37 100.0 34 ..................................... TACTCAGAGCGACTGATTCAATGAGAGGAGACCC 11890 37 100.0 34 ..................................... TTGTTTTTGTTTTGCCCTTCAGGGTCCCTGTAAT 11819 37 100.0 35 ..................................... TGCCCGCGTAGGTAGTCGAAAGACTGAAAGCCCCG 11747 37 100.0 40 ..................................... CATTCCCTTCCCCTGTTCCTGAGCCTCCCTGTGATGAAAT 11670 37 100.0 36 ..................................... TCCTTGAACCATCTAGCACCTGATACGGCTAGATGA 11597 37 100.0 39 ..................................... TTATATTGTCCTTAATGGTTGATAACATCCCGGTGAACG 11521 37 100.0 34 ..................................... CTAATTCCGTTTCATCAAAATTAGAGGGAGCCGT 11450 37 100.0 34 ..................................... TCACAATCGAAACTCTCACAAAAGAACATGCGTT 11379 37 100.0 35 ..................................... TATACTTATAGGTAATTACCTATAAGTATGTGCGA 11307 37 100.0 35 ..................................... TCAATTATACAGGCGACCTAGGTTCACAGCTAACG 11235 37 100.0 35 ..................................... CAAATGTCTGCATAGGCTCCGACATGCCCGCAAAA 11163 37 100.0 37 ..................................... ATCAATCAGTTCTCAATTCAGACCGGCTTACGATTGC 11089 37 100.0 36 ..................................... TGCCGAATTCTTTCATTCTTTCAAATTCGCCCTGCT 11016 37 100.0 46 ..................................... CCCTTGTTTACTGTGCTATAAAACGTAAGCGGTAAGCTTCCAGAGG 10933 37 100.0 37 ..................................... AATAATAGATATTCTTTAGTGTCTCATCTGACACGCC 10859 37 100.0 34 ..................................... TTTTCCTCTCTCTTTTTTCGCCTCTCTTCTTTCT 10788 37 100.0 34 ..................................... TACGTTGCCTGCAGCGAGGAAGTCGCCGGAGCCT 10717 37 100.0 35 ..................................... CTCATAACGGTTGTGCGTAAAGAGTACAAAACCGA 10645 37 100.0 33 ..................................... TCTTAGTAATGCTCGCAGGAGTCGGTGGTGCAC 10575 37 100.0 35 ..................................... TACGAAGTCGTATTCGCACAAATTAGCGACTAAAA 10503 37 100.0 35 ..................................... AAACGAACGCTAAAACTAAAACTAAAGCTAATTAA 10431 37 100.0 33 ..................................... CCTTCGGGCGTCCCTGCAGTATGCCAGTAATTA 10361 37 100.0 35 ..................................... ACGACTGCTGTAAGTCCTGGTCTAAATACTGGATC 10289 37 100.0 35 ..................................... ATGGGGTTTATTCTTTGCTTTTCAATCTGTCCTTT 10217 37 100.0 37 ..................................... TTTAATACCTGGGCAGTGTTTTCAGGCCCTTGTTTTT 10143 37 100.0 34 ..................................... AAGCTTTTGAGGGCTCAGCGACAACGACAGCTAC 10072 37 100.0 37 ..................................... TCCATTTTATTAGTCGCTTTTCCTGCTGGAATCCTTC 9998 37 100.0 34 ..................................... TTCATGGGGAGTTTCACAGCTGGCTGTGTAGGAG 9927 37 100.0 38 ..................................... ACTCCTTTAAGAGCTTCACAAGCGCAATCTCTAGCTCC 9852 37 100.0 35 ..................................... TTATCGCTCGCAGGTCTTCCTCTTCTTCCTGTTGT 9780 37 100.0 35 ..................................... CACAGTTGTCCAGCCTTACACAGTCTGAAGTAATC 9708 37 100.0 38 ..................................... AGTCTTGTACTCTGGGCAGCCTTTTGACCTGCGGTAAT 9633 37 100.0 36 ..................................... TTTATATTTGGTATCCGCTTTAGAGGTCTCCGTTTT 9560 37 100.0 36 ..................................... TTATTCCCTTCCTGGAAATTCCAGGGAGAAATAGAG 9487 37 100.0 37 ..................................... TAAAGTTATTGTTGATATACATGCAGAGAAAAACCGT 9413 37 100.0 34 ..................................... CCTACAATTCCTATGAAAACTAAGAAAGAAACGG 9342 37 100.0 35 ..................................... TAACCTCGGCAGATGGTGGAGAGACATGGATTGAG 9270 37 100.0 34 ..................................... ACGTCAGGTCTTACAGGGTCTTCAATCCCCACGT 9199 37 100.0 35 ..................................... TATATAACTTTGCATTCTATAAGAATTAAAAAAGA 9127 37 100.0 35 ..................................... TATTCTACCGTTGAAACATGCCGGATCAATGGGGT 9055 37 100.0 37 ..................................... GCAATAATCGTAGTGAGGAAAACAGGTGAAAGGTTAG 8981 37 100.0 36 ..................................... AAAAACGTGTCGTTGAAAATGTCCGGTTCAAATGAA 8908 37 100.0 37 ..................................... TTGCCCGCTTGTCGGCGTTGCTGAGTTCTTTGTACTC 8834 37 100.0 37 ..................................... ACGATAATGCTATCCCTGTTTTGAAAGAAACTATTTT 8760 37 100.0 37 ..................................... TATACTATATCCGTGACTATAGTATTGTATGACAGAA 8686 37 100.0 37 ..................................... TCGCTCTTTCTCTTTTCAGCAAATCATTAACAAGCGT 8612 37 100.0 37 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGTC 8538 37 100.0 33 ..................................... GTTCCCTGCTGTAGTATGAGCCGAAATTGGGAG 8468 37 100.0 36 ..................................... TGATATCTGTTGCACTCCTTCATATATGCAAGAAGT 8395 37 100.0 35 ..................................... TTCCATGTATCCACTATATAGACGAAAGGGTCTCC 8323 37 100.0 35 ..................................... TTTTGCCGCTAGAATTACACATCATTCACCAGAGT 8251 37 100.0 39 ..................................... AGAAAGTAGTAGGAATTAAATGGTTCGATTTCTAACTAA 8175 37 100.0 34 ..................................... ACTGCTCCATTGAGACCTTTCTTGTTACCGAAGT 8104 37 100.0 37 ..................................... AAAAATGTCTCTATTATATACGCCTGATGTCCGTAAA 8030 37 100.0 34 ..................................... TTGACGTGGAGCGCGGAGGTCGCGAAAACCCACG 7959 37 100.0 36 ..................................... ATTCAGAACCTTACATCAAGCCATTTCCGGGCACTG 7886 37 100.0 36 ..................................... GTGATGGATTCCTTGAGTTTCACCTGAATCGCTCTC 7813 37 100.0 35 ..................................... CGCACTAATTAACACGAATTAAAAGAAAAGTAACA 7741 37 100.0 38 ..................................... TTTTCTTTTTCAGTCGTCCCGGTCATGGCTGCAGACGA 7666 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7593 37 100.0 35 ..................................... TGCTTATTTCGAAGTAGCAAACCTGTACTTCGGAT 7521 37 100.0 36 ..................................... TGAATTACATCTCCCGGATCTGCGGGCATGGTCCCG 7448 37 100.0 35 ..................................... TGAGCTCGGTTTCTCTGTTGAACTTCTCCGCTTCG 7376 37 100.0 36 ..................................... TTACGGAGGCTACAGAAAAAGCCGTAGCTGATACCG 7303 37 100.0 34 ..................................... GAAGGAAGTGAGCTTGTTTTAGACTGTGCTGCTA 7232 37 100.0 36 ..................................... ATGCTAAAATCGCATACACTAGGCTGTCTACCCTAT 7159 37 100.0 36 ..................................... TATGTATATTCATATATTCGAGCACGGCGAAGAACT 7086 37 100.0 35 ..................................... TGGATCGTGGAGGGAGAAGATTGAGTAATAAAAAA 7014 37 100.0 35 ..................................... AACATAGATTTTGACGAGCAGGACATAAACCAGGG 6942 37 100.0 35 ..................................... AAAATGATTCATACCTTTGTAATTCAGATTTAAGG 6870 37 100.0 36 ..................................... TTGTCCGGATTTTGTGGATTCTTGATATTTCCCTGA 6797 37 100.0 41 ..................................... GGTTGCCCGTATGGTGTTTCGATCATATCTTCGTCACTCCT 6719 37 100.0 37 ..................................... ACCAAACCAAAGCAAGCCAGAAAGCCTGGCAGTATCG 6645 37 100.0 36 ..................................... ATTCTGCGGGTGGGGCTGCCGTCACAATGGGCGGGA 6572 37 100.0 35 ..................................... CAACGATGTAATGTTTTGGAATTGCTTTTCACCTT 6500 37 100.0 35 ..................................... TAGACCCCGCAAGGCCCAGAAGTGCGGTCCTAACA 6428 37 100.0 36 ..................................... TTTCATAAATTCGAGTCACATAAATATCCATGATTG 6355 37 100.0 35 ..................................... TGCGGCTTTATCTATTCAGGAATCTGAACTAAAAG 6283 37 100.0 36 ..................................... ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 6210 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 6138 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ============================================== ================== 124 37 99.9 36 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : TTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 7975-2744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPY01000002.1 Methanosarcina mazei strain 3.H.T.1A.1 scaffold72_1_size17074-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 7974 32 100.0 34 ................................ ATGCAGAGGCATCTTGAAAAGGAAGGGATACACG 7908 32 100.0 32 ................................ AGGCAGGAGTAGACGAGGTACAGAGCACAGAA 7844 32 100.0 34 ................................ AGGGAAAACAGGCATTGTAATCAGAGGAAAAAAA 7778 32 100.0 35 ................................ CCTTATCTGTGAAGTAGGACGTGGGATACTCTCAT 7711 32 100.0 35 ................................ AGCATATCGAGCATGTCCCTCGGATATCCTGCGAG 7644 32 100.0 34 ................................ TCATTGGGCAATAATAGAGGGATCTCGTCCCGTC 7578 32 100.0 32 ................................ TGTTTGCGACAACGACATGCGGGGATACGGGC 7514 32 100.0 35 ................................ TGATAAGGTCACGCGATTTATCCCGGCAGCCACCC 7447 32 100.0 34 ................................ AAACCCTTTGTCAAGAAAGTAGGAATCGAGAAGC 7381 32 100.0 34 ................................ TAGACTTGCGTCTATATTGACTGATTCATGCAGT 7315 32 100.0 34 ................................ GATAAGGCTGGAAGATATCGATATTCAATTGATC 7249 32 100.0 33 ................................ AAAACGGAGACGGCACCCTTGTAAATATTACAG 7184 32 100.0 34 ................................ ATCAAAATATTTCCTGACGTATATCCAATCGATG 7118 32 100.0 31 ................................ CCTCTGAATCATAGGAATAATACCCACCAGG 7055 32 100.0 39 ................................ AAAATCGCATTAACCTCCTGGACCTGCTCCGGCCAGAGT 6984 32 100.0 33 ................................ CAATTGTTGCGGTTCCGAGATCAAAACCTGCCA 6919 32 100.0 35 ................................ AGTAATAATGGAGTCATAAGACCCAAAATCATGAA 6852 32 100.0 35 ................................ TCTTCTTGAGGTGGTTTAAATGCCTAAATTTAACC 6785 32 100.0 36 ................................ TTGTAGAATACTACAGTGTTAAGCCCCGTGAATGGG 6717 32 100.0 38 ................................ TTCCTCAGTACTCCGTTTACCCTCACATACAGTACCCC 6647 32 100.0 36 ................................ TTAACAAGGTCTGCGCCTTCGTCGAGCGTTAACAGT 6579 32 100.0 34 ................................ CGAAGTATTTTCAAAAAGAAATAACAGCTTAATA 6513 32 100.0 36 ................................ TTACTACAGGTGCCCCTGGTCTTGCCTGTGCGAGTT 6445 32 100.0 32 ................................ ATGAGCGTGATTGTAAACGGGACATTAGCAAC 6381 32 100.0 35 ................................ CTTAAGCACAGTTCTATTTTTTGACCTCGATATTT 6314 32 100.0 33 ................................ AGTTCATTATGCTGATAGTCCCTAAGATAGAAC 6249 32 100.0 35 ................................ TATTTGGTGTCAGCATTATTCCAAGTTCAGCTGAG 6182 32 100.0 36 ................................ TCTCAAATGTGTCTTTCATGGTTGCCACAAGTGCGG 6114 32 100.0 34 ................................ CTTAAAGTAATACAATAATAAAACCGATAACAGG 6048 32 100.0 34 ................................ ATGTTCGTTTGTGGGTCTTTTTCGAAAACGAAAT 5982 32 100.0 37 ................................ TGTATTATGCATTGCCACAATGCGCTCGGCTGCTGCT 5913 32 100.0 35 ................................ AGATCACTAACTGTGATATCATAATCCTCAAACAT 5846 32 100.0 34 ................................ AATATAATTAGTTATAGAAAAATCTGGGCGACTC 5780 32 100.0 34 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAG 5714 32 100.0 37 ................................ GGTGATTATGTCCTTGACTATCGTGCTTTTTGTAAAA 5645 32 100.0 37 ................................ ACGCCACCAAGGGGATTGCATTAGGCTTGTATAGATC 5576 32 100.0 34 ................................ AGAATTAGCTGGCATCATAGAAAATTCGCTTCTA 5510 32 100.0 34 ................................ AGTTTCCTGATCTCCGTAATCAAGGAACGGAAAC 5444 32 100.0 36 ................................ ACAGACACTATATATATCAGCGTTTGACGGTCTAAA 5376 32 100.0 32 ................................ TAAGCCTGTTTGGTCTTGCAGACCATAAAAAA 5312 32 100.0 34 ................................ ATAAAAGCAGGGCGGGTGACTGTTGAATTAGGGG 5246 32 100.0 33 ................................ ACTAAAACGTAGCTTTCCGCAACTGAACATCCT 5181 32 100.0 36 ................................ AGTGCATGGTGATAGGCAGGATAAGCCCCAAATACG 5113 32 100.0 34 ................................ AGTTGTTGGTTATTTTTATGTTAAGAGGATTCAA 5047 32 100.0 34 ................................ TTGCACGTTAGGGACCGCACTAAGCGCGGAAAGA 4981 32 100.0 35 ................................ TCGTTTTCCCAGGTCATGGTTATCCCTCAACTACC 4914 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 4848 32 100.0 36 ................................ CAGGACCTTACCCGGCAACAATACGAGCTCTTTAAA 4780 32 100.0 34 ................................ CGTATAAACCACAGACATAATCATCAATGTCAGG 4714 32 100.0 33 ................................ TAAAAAAGAAACTTGATGAATGTAAAAAGGGGA 4649 32 100.0 36 ................................ TAAAACTTCGATATCAATCATAATGTGGCTCCGATT 4581 32 100.0 36 ................................ AGCAGATGGGAAAACCTGGACCGCCGCAACCTGCCC 4513 32 100.0 34 ................................ TTTGAATTTAAGAACGTCGAGAGAACCGGCTGCA 4447 32 100.0 35 ................................ CACTTGTCTACATTGTCCATGCGAACATTTCCCCC 4380 32 100.0 35 ................................ ATCTAACGGATTGTATAATAGATGGTATAGGGAGT 4313 32 100.0 34 ................................ CCGGAGCGTACCAGTTATTCCTGCCGCTCTAGCT 4247 32 100.0 34 ................................ CTTTACCCATCCAAACATCCCCGCTTTTTTGGAC 4181 32 100.0 33 ................................ GAGGAAGACTTAGACACAGATGAGGACCTGGAC 4116 32 100.0 36 ................................ TTTTTCGCACTGTATCCAGCCCTTACAACAATTGGG 4048 32 100.0 35 ................................ TTTAATTATATCGTCAACTACTTCATAGATATACT 3981 32 100.0 38 ................................ CCCATTCGCAAGACTGCTGTTGGGGTTCCGTGTAGGGC 3911 32 100.0 35 ................................ CGAAACATACGACTGATTTGCCGAATTCCCGTCGA 3844 32 100.0 34 ................................ CTGATATTACTTTTATTTGCATTCGGGATGGCTC 3778 32 100.0 35 ................................ AGATTCAGGGCACTCAAATTTCACATATGCCGGGC 3711 32 100.0 34 ................................ AAGACATTGAGACAGTATTTTAAGGAATTTCAAG 3645 32 100.0 36 ................................ CTGACGAAAAATATAATATGGTCACTGTTTATGGTA 3577 32 100.0 35 ................................ TCAGGAGCAACATAAACTAGGGTTTTGTTTCCGAG 3510 32 100.0 35 ................................ TCTGATGGAGCCGGAAGGAAAATCCCGTATTGGAT 3443 32 100.0 34 ................................ CATATTTTAGAATTCACGTACCCCCCGTCTTCAT 3377 32 100.0 35 ................................ TTCCAGGGATTGCACATGCCGCAGAAGAAGATCAC 3310 32 100.0 32 ................................ CAAACAAAGATGCCATATTGACTAAATCAAGA 3246 32 100.0 33 ................................ CCCGCAGGAGTCGCGGAAACATAAGGCCCCAAC 3181 32 100.0 38 ................................ CGGCATACTGCCAGGATATGTATAAGTCAAACTTTCTA 3111 32 100.0 35 ................................ TTTTTGAAGTGCCCTGGTTTGCTGAATATGTGATA 3044 32 100.0 34 ................................ AGTATCTACAGGGCATTTGTCCCCATCGTCAAAC 2978 32 100.0 34 ................................ ATTGCCCCGATTATCCAGGCAGAAAGAGTCGAGA 2912 32 100.0 36 ................................ AGATTAGAGGTTGTCGGCTGAAATGAATTAGAAGTA 2844 32 78.1 35 ...A..T......A......A..A..C..T.. CAGTCAAAGATTCCCTTTATTCTGACCTCGATTTC T [2837] 2776 32 90.6 0 A...............A............G.. | G [2746] ========== ====== ====== ====== ================================ ======================================= ================== 79 32 99.6 35 GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Left flank : AGATATTGACGGTTATCCGCCATTTTTTATGAATTGAGGTGTTTATAGTGATGGTACTGGTTACTTATGATGTAAACACAGAATCAGAGGGTGGAAAAAGCAGGCTGAGAAAAGTGGCAAAAGAATGTGAAAATTACGGGCAAAGAGTTCAGAACTCTGTATTTGAGTGCCTTGTGGACCCTGCTCAGTTTGCAGAGCTAAAACATTCTTTATGCGATATTATGGAAGAGGATAAAGATAGTCTCAGATTTTACTACTTGGGTAAAAATTGGAAAAATCGGGTGGAGCATTTTGGCGCGAAAAAAGGGTATGACCCAGAAGGTTTATTACTTGCATGATGTCTGCGAACCTGTAGTAAACATCAATTTCCCGGGGGTTCGCAGGAAAAATTTGTTCATAATATTTAATTTTTGTGACGGTTTATATCTATAGTCAATACTTAAAATTTTTTAAGACAGAAAAATACAAGATGGTAGAAGTATAACCTTAATTTATTTACA # Right flank : GTTAAAGCTGTGGCCTTGACATTATCAAGAACCATTTTTTATACAATGTCAAGCGAATTTGAAAAATAATAAACGGCAGCAGAAGAATAATATTTTTACGTAAGAAATCTTCGGAAAGCCAATTATTAAAATCTCATATCCCTGCTTCGTACATTGCTTGAAGTAATTCATATTCTGCATTAATGACTTCAGGAGTTCTATCTTTGTTTAATAACGAATTCATTTTATCAAGTGCTCTTTTATAATTTTCAACTTCCACCGGGCAATCGAAGAGATAATTAACTTTTATTTGTGGCTTATCGGGGTTCTCTGCGTTCCATGAAACCCTTAAGAAATTATGGTTCGCATCCATGACCTCAGCATCATAAATAAAGTCCATGCGTTCATGTTTAAGTAATTCAGATTTAGATACCCCACTGTCTACTAACCGCTGCCTGGCTCGTGCCTTTGCCATCTCAAACTCTTTAGAACAGCGCAAGAGTTCAGGAGTATATGATAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 156310-164714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPY01000106.1 Methanosarcina mazei strain 3.H.T.1A.1 scaffold2_1_size212454-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 156310 37 97.3 38 .....T............................... TATTTTTGATAGATGTAGCCAGTGCAGGCCAGATAATT 156385 37 97.3 38 .....T............................... TATTCAAGAGCAGGCCAGGAACTACCGCGCCAAACTGT 156460 37 97.3 35 .....T............................... TGGCTTTTGCGCTCGTTGGAGGAACTACCCAACCT 156532 37 97.3 38 .....T............................... TCCAGACCGGTTGAGACATAGGGGTGGCAGACGGAAAG 156607 37 97.3 41 .....T............................... TTGAGTATGTTAAGGGCTGCTGTTCTTACGTTGTTGAACTG 156685 37 97.3 39 .....T............................... TTTATCAGACTTGCGACCCGGCGACCTCCACAAAATCCA 156761 37 97.3 35 .....T............................... AGAACTCGGAGCAGGCAAGAAGCAAAACATACCGA 156833 37 97.3 36 .....T............................... TTTAGTACTGTTCTGCCTTCCGTTTGTGTTCATTTG 156906 37 97.3 35 .....T............................... TCAATAAAATTATCTTGTCCTCTGTGACCTCTCCT 156978 37 97.3 36 .....T............................... AAAATATCAGTATTGTTAGTACCCTTCCTATAGGGT 157051 37 97.3 38 .....T............................... ATACAGGCTTGTTAGAATTACTCAGGTTTGACTTATTT 157126 37 97.3 35 .....T............................... GCCGTGACTTCGATAAGCTTCTCATAAATTGCGGC 157198 37 97.3 35 .....T............................... ATGCGATCCGCCAAAAGAGAAAGCTGTTCAGGAAT 157270 37 97.3 34 .....T............................... GCGTCTGTTGTATTTTCATTTGCAAATGTGACGG 157341 37 97.3 35 .....T............................... CGGTCCAATTTGGATCAGGAACCGAAACTCTAATC 157413 37 97.3 37 .....T............................... ACCCGTTGTTAGTCTGATACTACATGGACATTTAGGC 157487 37 97.3 35 .....T............................... ACAGATTAACATATTCAGATTCAAGAGCATCAACT 157559 37 97.3 37 .....T............................... TGGACAGGGAGCGGGTTTTTTGCAGGGAGGTTGTAAT 157633 37 97.3 34 .....T............................... TGTGCAGACGGGATAATCTGAAGACGCTCATCAT 157704 37 97.3 35 .....T............................... TGTTAAAATTCCTTCTGAAGAATTGAACGGGGCTT 157776 37 97.3 36 .....T............................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAAC 157849 37 97.3 36 .....T............................... ACACTCGCGAGCAGGGAATATCCATTCCCTAGATCC 157922 37 97.3 36 .....T............................... GAATTTTCAGGACTCACTTTCGATGGAAATTACAAT 157995 37 97.3 36 .....T............................... CCTAATAAGTTCCAAGCTTTATCAAGTCTGTTTCTG 158068 37 97.3 37 .....T............................... CATCCTGTGAATTCAGGAAGCAGTCTTGAAGCAAGAA 158142 37 97.3 35 .....T............................... CATGAGCTTCCAAGGCGCGGGATGGTCGAAACCTG 158214 37 97.3 35 .....T............................... ACACTTACTTCAAGCAGTGCCGACACTTCCGCGAA 158286 37 97.3 33 .....T............................... GCCCCGATCTCCTGAAGAAGAGGCTGGATATTT 158356 37 97.3 35 .....T............................... CTTCGTGATACCGTTTCCCCATCAAAAAAGAATTA 158428 37 97.3 34 .....T............................... TGCGATTCCACAGACTCAGTGAAACCCATGTCAA 158499 37 97.3 38 .....T............................... ATTATACCCCCCATATATACACGCGTATTATCAGAATT 158574 37 97.3 36 .....T............................... TCAAATCAGAGCATTATAAACAGTGAAAATAATAAT 158647 37 97.3 34 .....T............................... AATACTTCTGCTGAAAAACATGTTATTTTTTGAG 158718 37 97.3 37 .....T............................... TTGAGTCGATATCTTCCCAAAATGTCTTTCCATTGTT 158792 37 97.3 35 .....T............................... CTCACCCAGTTCTTCAACTACTCCGGAACTTGACA 158864 37 97.3 37 .....T............................... TCTATTATTTCCTCTTGCATCATTCCACCCCTAACAC 158938 37 97.3 35 .....T............................... CTATTACAGAATCTCCTTTTGGCGGGCTGAAAGGT 159010 37 97.3 36 .....T............................... TATAGCACGGGTATCGGCAACAACTAAACTCTGTAA 159083 37 97.3 35 .....T............................... CTGCTTGTAAGATGAGTTCGTTTACCATTGTTTTA 159155 37 97.3 35 .....T............................... AGAAACTCAAAATCTGCGTTTTCGGCTGTGATGCA 159227 37 97.3 36 .....T............................... TCTCTGCTTCGTTCTTTTCATATGCTTTTTCTGCTT 159300 37 97.3 35 .....T............................... ACGCATTGTGTTAGCATCACAGACTTAAAATTATC 159372 37 97.3 35 .....T............................... CAGTTAATTTTTCATTATTGATTCAATGAACAGGA 159444 37 97.3 35 .....T............................... ATGATACGTGGGTTCAGTGCATGGTAATCGGCAGG 159516 37 97.3 35 .....T............................... GGAGTCTGGCATCTATCCACTTCTCAGATGTTCTC 159588 37 97.3 35 .....T............................... CTCGGTAACAATATCAAAAACGCTATCAGTGATGT 159660 37 97.3 34 .....T............................... CTTATATATGAATTCGGTTTTAACCTTCGTTTCC 159731 37 97.3 34 .....T............................... CATTAGCTTTTCAATTAACTTCTCATTTGCCTTA 159802 37 97.3 34 .....T............................... ATTCAAGAAGCTCTTTTTTCATGGTTTGGATTGA 159873 37 97.3 37 .....T............................... ATAAACTAAACACAGAAACGATTCTAGTAGACGGAAT 159947 37 100.0 35 ..................................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 160019 37 100.0 34 ..................................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 160090 37 100.0 36 ..................................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 160163 37 100.0 35 ..................................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 160235 37 100.0 35 ..................................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 160307 37 100.0 35 ..................................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 160379 37 100.0 34 ..................................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 160450 37 100.0 37 ..................................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 160524 37 100.0 35 ..................................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 160596 37 100.0 38 ..................................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 160671 37 100.0 37 ..................................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 160745 37 100.0 33 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAAA 160815 37 100.0 35 ..................................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 160887 37 100.0 35 ..................................... AAATCTGCAATCGCTCAAGAATTCAAAGATAAGAG 160959 37 100.0 35 ..................................... ACAATACAATTACTCATTCTCCAGTTTGATCCATA 161031 37 100.0 35 ..................................... TTCGTGTTATCGCTTGACCAAGTCCATTAACCGCG 161103 37 100.0 34 ..................................... TAATTCTTGCTTTTGTGATTCCCTTCTTCCTGAC 161174 37 100.0 36 ..................................... ATTCGAGAGTCCGTAAAGCGTGGGAGACAAGGAGGT 161247 37 100.0 36 ..................................... CACACTGCAATAACTCCTAAAATATGGAAAGCTACA 161320 37 100.0 35 ..................................... CATGGTGATAGTCATGGTTAACAAAGTGTTTAAAT 161392 37 100.0 35 ..................................... CTAGCGACAGGATCTGCTGTAAATGCATCATAAGA 161464 37 100.0 34 ..................................... AGATAAATCGCCCATGTCTACAAAAGAAAGAAGA 161535 37 100.0 35 ..................................... TGTCTCTAGCGGCACTCTGCTCACCAGCTCGATTC 161607 37 100.0 32 ..................................... TCGGCACTGTTATATTAAGGAGTCCGAGAGGA 161676 37 100.0 34 ..................................... TTTGTTATCACTGATTTGCGTCTCGGTGTTAATG 161747 37 100.0 35 ..................................... CGGAAAGAGACTTAACGCTTTTCCAGACCTGAAGG 161819 37 100.0 37 ..................................... CTCATCAAATCTGTTGGAGCTTGTGCCCGCTTCGCTC 161893 37 100.0 36 ..................................... CACTGTTGCAGAAGGCGGAGCAAGCGACATTGTAGC 161966 37 100.0 34 ..................................... TACGTTGTAGTGTTTGCAACCTCATTACCATCAA 162037 37 100.0 36 ..................................... ATACTAATACGCTTTTTAGATATAAAAAGGTATCTA 162110 37 100.0 32 ..................................... CGTTTCCTTCTTTGAGGATGCAGGTCATTTTT 162179 37 100.0 35 ..................................... AAATCTTTTTTATCGCTTATCTGTTTCCAGTGATA 162251 37 100.0 34 ..................................... TAGTTACATTCCATCAACAAAAAGAGCCTTACAG 162322 37 100.0 34 ..................................... CTGTCTAGGCTGCCCGTATCTATTTCGATTCCGG 162393 37 97.3 34 .....C............................... TTAGTAGATACTTAGCTAAGTAAATGTATAAATA 162464 37 97.3 35 .....T............................... CTTATGTTCTGTGCTCTTAAAATAGTGCGCGAAAA 162536 37 97.3 37 .....T............................... CCCATTTCCCGCCGTACTTTTCAAAACCACAGTCAAC 162610 37 97.3 33 .....T............................... AAAAATGACTGAAAGAGCACCAAATAGACCAGG 162680 37 97.3 35 .....T............................... CCATGTTAAATCCTCACGTTGATATCAGATATTGA 162752 37 100.0 34 ..................................... AGTTTTCCCTCAAACATCTGATTACCTAGGGCAG 162823 37 100.0 36 ..................................... TTTGAGAGTGTGCAATATTTGAATTGTTCTTTTTTT 162896 37 100.0 35 ..................................... AAAATACAAGTAAAGTAAGCCACACAATCCCTCTC 162968 37 100.0 35 ..................................... AAAAATCCCTCAAAAAAGCCTTTTCTCAAATTGAA 163040 37 100.0 34 ..................................... CCAACGTATCAAGAAATTGAAGTGACTACTCCCA 163111 37 100.0 36 ..................................... TTGATTCTTCCAACGGGTCTACAAATACCGCGTCCC 163184 37 100.0 35 ..................................... ATGGGCTGTCTAAAGGGGCTAATGGGGCTAATTTC 163256 37 100.0 36 ..................................... CGTCCCATCCGGCAAGAGCGAGGTAATACATGGCTT 163329 37 100.0 34 ..................................... TTTTTCAAAAGAGGACATTAAAAAGAATAACAAG 163400 37 100.0 36 ..................................... TTGGAAACTCGCAAATCCTGTAAAAATTGAAAACCC 163473 37 100.0 35 ..................................... TACAAATCCTGGACATTTCCAGAATATGAATTCCC 163545 37 100.0 34 ..................................... TTACAATGATCCTGGATACGGGTCAAAGTCGGTA 163616 37 100.0 37 ..................................... TTTTGCTAGCTTCTAGCATTCTCACACTTAATAGCTG 163690 37 100.0 35 ..................................... CAGTTGCGGTATGTTCTTTGACACCTACAATAATT 163762 37 100.0 34 ..................................... AATAATAATACAACAAGTCATCCAAGTGACGGGT 163833 37 100.0 43 ..................................... TAACCCTCACAAACAGGGGTAATCTACTGTTAGAGTGCCTGAC 163913 37 100.0 32 ..................................... TTATCAGCGTGGATATAATACTTATATTTCTT 163982 37 100.0 37 ..................................... ATTTTGTTCGGGGATTTTAGATTTTTGACTTTCGACA 164056 37 100.0 36 ..................................... TGGTTGCCTGTCCTTGCCCGTCAAGAACGGTATTGG 164129 37 100.0 38 ..................................... CGTGGATGAATTAAGTTTGAGTCAGCGATATACAAATA 164204 37 100.0 38 ..................................... TACATTGGAACCCCTGCATATCATCCATTGGTTCAAGT 164279 37 100.0 34 ..................................... AATGTTAGCTGCCGATTCAAGAGCTGGTCCGAAA 164350 37 94.6 71 ...................................GT CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAACCTGAGGTAGTAACGATTTCTCCTTTGTTGGTAATAC 164458 37 83.8 35 TG.......T.GCT....................... AATCTTCAGGATGCTGCCTTCTAATTTAGCAAAAT A [164463] 164531 37 86.5 34 .G.......T.GCT....................... TTTACAATTGAGTCCGGGAATTCGAAGTACTTCT A [164538] 164603 37 83.8 36 GG.......T.GCT....................... TTTATTCTTCCTTTCCTTTTCCTACTTGCGCTTTCC A [164608] 164677 37 81.1 0 TG.......T.GCT......................G | A [164682] ========== ====== ====== ====== ===================================== ======================================================================= ================== 116 37 98.1 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : GTTGTTCTCTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTACGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.68, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //