Array 1 63464-61483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHUC010000020.1 Salmonella enterica subsp. salamae serovar 42:r:- strain HAZEL-094 NODE_20_length_92803_cov_13.329114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63463 29 96.6 32 ...........................G. GCGCTGGAGCTTGAATCAGAGTTGTTGCGTGC 63402 29 96.6 32 ...........................G. CACCGGAAACTTATACCGGCCTGTTCGATGCC 63341 29 100.0 32 ............................. CAATACCGCCTTCCTCTGTGCTCAGGCGGTGC 63280 29 100.0 32 ............................. CCGGATTCTGCAACGACTGCGGCGATGAAATT 63219 29 100.0 32 ............................. AACACAGCGCGGCGTTTACAGTTGCCAAAATG 63158 29 100.0 32 ............................. CATCCACGATTAATCGCGATATTTACCGGTTA 63097 29 100.0 32 ............................. CAATAAATACGCGTTAGCCGTTCCCGGTCCGC 63036 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 62975 29 100.0 32 ............................. GTCAATTCACCTGCGGCGCGAGTTTTTATTGT 62914 29 100.0 32 ............................. ATGGTGCCCGGTTTGAGCCGTTAATTGGTGAT 62853 29 100.0 32 ............................. ACACTGCTGACGCGGACATATCGCGATTGCTG 62792 29 100.0 32 ............................. GTTGACGAGGTTAATAAATCCTGATGACATCA 62731 29 100.0 32 ............................. GGAAACGCCGTAAATTGTGGTACGTCGTCACT 62670 29 100.0 32 ............................. TATCCTGCGCGACGCCGGACTTTCCAGAAACC 62609 29 100.0 32 ............................. GGTAGAACGTTCTCGGTCATGATGACTGAGGC 62548 29 100.0 32 ............................. CTGTGGTCTGCGCTGCTTGGCTGGCAACCGGC 62487 29 100.0 32 ............................. CGGCTTGACCACATCAAACCGTTTATCGCCCT 62426 29 100.0 32 ............................. GAATAGCGCCTTTTCCAGTAGTGATGATCTTA 62365 29 100.0 32 ............................. GTTCGCGGTTCTGTATCGCCTGAAACATTCGC 62304 29 100.0 32 ............................. CGCATGTTAGCCGAGTTGCTGAATTAGGGTGT 62243 29 100.0 32 ............................. GCGATAGAAAAAACAAAATAGGAGAAATGTTT 62182 29 100.0 32 ............................. GTGTCAGGGGTGCGATCCTGCCGTGTTGAGGG 62121 29 100.0 32 ............................. TTTCCGCGATGCGCCATGAAGGCGATCCCGTC 62060 29 100.0 32 ............................. CAATTGACGAGCCTTCCATATAGGACGCCCGC 61999 29 100.0 32 ............................. GCCAACTTTTCAGCCTGGGTTATCGATGCTTG 61938 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 61877 29 96.6 32 ............................A AGACGGACATCCAGTGGACGCTAACAGCAATC 61816 29 100.0 32 ............................. CGACCGGTGAAAATTCAACAGCGACAGGAACG 61755 29 100.0 32 ............................. CGGGGGAGGTGAGCTTGATAACATCCGTTCGT 61694 29 100.0 32 ............................. CTGGTGGATTATGGCTGTATTGTTTGCCGTAA 61633 29 100.0 32 ............................. GCGAGCGACGCACTGAAAACGACAAAACAGGC 61572 29 100.0 32 ............................. CATCAGAAATCCCCGCCCGGTGCGCTGCTGCC 61511 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGCCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAGTTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GTCACGAGGTGATTCACTTGGTACTGGCTGATGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 124829-126078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHUC010000006.1 Salmonella enterica subsp. salamae serovar 42:r:- strain HAZEL-094 NODE_6_length_175738_cov_17.145230, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124829 29 100.0 32 ............................. ATTTGTGATATGGGGTTAGAGCTGGATGCGAA 124890 29 100.0 32 ............................. ATGCCGTATGGCCCCCAGTTGTCACTGGCGGC 124951 29 100.0 32 ............................. GCTGTGCTGGGCCAGACGATGACAACCGACGA 125012 29 100.0 32 ............................. CGAGGGGCATGTGATGCTGCGCGGAAAGTTCG 125073 29 100.0 33 ............................. TTGTTCCTGCAATGCGGGCCATTACGATTCCTC 125135 29 100.0 32 ............................. TAATTAGTTCGTTCCCATTTCCACGAGTCTTT 125196 29 100.0 32 ............................. TTTACCATCTACTGAAGACCAACTATCACGAC 125257 29 100.0 32 ............................. GGAGTTGGCGAGTTTTATTTCACTGATTTGCA 125318 29 100.0 32 ............................. GCATCCCACGCATTCCTAAAACAGAATTATTT 125379 29 100.0 32 ............................. CCGTAATGCTTTTTATGTCCTCGCTTCGCTGC 125440 29 100.0 32 ............................. CCGCTTGCCGTCAGGCTTGCGCACCTGCACAC 125501 29 100.0 32 ............................. TATGCTAGGTGGGATTAACGATAGGCGAGAAA 125562 29 100.0 32 ............................. TAACCCATCGTTTTTTTTCCGCGCTGGAAAGT 125623 29 100.0 32 ............................. CCGTCAGAAAATCTACCCGCTGATCCACCGTC 125684 29 100.0 32 ............................. GGCTCCGTAGCAGATCTGCAGGCGTTCGGCAC 125745 29 100.0 33 ............................. GACGGCAAAGCCTGGAAACAGTTCAAGCGATTC 125807 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 125868 29 100.0 32 ............................. AACGTGCTATGGGGTGTTTTGGGAACGTTTTA 125929 29 100.0 32 ............................. TTAAGTCCCCGGCATTCGGCTATGCCTATTCA 125990 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 126051 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGACATACATTTAGA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGACAAATCATTAAGGGCCAAACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTCTGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGGCTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143382-145484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAHUC010000006.1 Salmonella enterica subsp. salamae serovar 42:r:- strain HAZEL-094 NODE_6_length_175738_cov_17.145230, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 143382 29 100.0 32 ............................. CCTTTCAGGAGCAACAACTGAACGCGCGAGTG 143443 29 100.0 32 ............................. GACGTTTGCGCACCGATCACTTTCTACCTGTT 143504 29 100.0 32 ............................. GGGCGCTACGTCCGGGTGTGATGGCCGTCATT 143565 29 100.0 32 ............................. TGTTGCCAGTGAAATAAATGGTCTGGTTTCAC 143626 29 100.0 32 ............................. CGCCAGCCGGATTGCATCCATACCCAGCTTGC 143687 29 100.0 32 ............................. CGCCGCGATTGATAGCGCGGGCAACCGCATGA 143748 29 100.0 32 ............................. TATTTCACGGAATCAACACTGCTGGCCGCGAT 143809 29 100.0 32 ............................. GTTGGTCTAATGTCAAAATGTCCAAAAGGAAT 143870 29 100.0 32 ............................. TCGCAGGGCCGCTTACCCTCCCCCCGCCAAAA 143931 29 100.0 32 ............................. CCCGCTCAATGTGGGATGAGGCTATAGATGCT 143992 29 100.0 32 ............................. CTCTGCCCGGAGACACATTTCATCTCAAAACG 144053 29 100.0 32 ............................. CGTTTGCATCAATCCGGACAATTCCCGCTATA 144114 29 100.0 32 ............................. GGGCACCGGGCGACTTGGAATTCGCGTCTATC 144175 29 100.0 32 ............................. CTATCATCGCTGAACGATGCTAATGGGTAACG 144236 29 100.0 32 ............................. TGTCCTGTACCTGTAGGTGTGTGCCCTCCCGC 144297 29 100.0 32 ............................. CGGTTTCGTCGATTTCTTTCGCTTTTTCGTTA 144358 29 100.0 32 ............................. CGACGCGGGATTTTGTCGGATATTGAAAACAG 144419 29 100.0 32 ............................. TTCTATGGATAACGCCGTAAGCCAGATGGAAG 144480 29 100.0 32 ............................. CACGTCTACTGGCGCGATCTGCATCCTGTGAT 144541 29 100.0 32 ............................. GCGATATCGTCGTCATTATCGTCGCCGTCGTC 144602 29 100.0 32 ............................. AAAACCCGTCACCTCAATTGTCGGGTTCGACT 144663 29 100.0 32 ............................. GCGTCTTATACGCGTTTATAGGTCTGGTACAG 144724 29 100.0 32 ............................. AATTAAATCGCCAACGGTCTGGCGCCACGGCG 144785 29 100.0 32 ............................. GGCTTCAATACGGGCCAATAATTCGGATTTAG 144846 29 100.0 32 ............................. TATTCCCCCTCGTCACCAATAACGCCACTAAA 144907 29 100.0 32 ............................. CCCCGTTCTGTTATCCGCGCCCGCTGGGCAGT 144968 29 100.0 32 ............................. ATTTGCACGCCCGCGATAATGCCCCAGAGGCG 145029 29 100.0 32 ............................. TGGAATTGCGGGTCAATAACAAGACTTATGCG 145090 29 96.6 32 ............T................ GCTCGTCGAGGTGATATCAAGGCGGCGTTTCG 145151 29 96.6 32 ............T................ AGCGCGAGAACTGGAAGGAGTTGCAGGAGTGG 145212 29 96.6 32 ............T................ AAAAACTGTTCATGGAAAGCAGAAGATACATT 145273 29 96.6 32 ............T................ GGGATGGCGAATTTTGATAGCGAACAGGCTAT 145334 29 96.6 32 ............T................ TCAGAGCGCTTTCTGTCGCGATTACGCGAGAA 145395 29 100.0 32 ............................. TGGAATTGCGGGTCAATAACAAGACTTATGCG 145456 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTTCTTTGGGGGACTCCGGTCATCGGAGTAACTGACGATGAGTATGCTGGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //