Array 1 721041-715365 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQD01000002.1 Bifidobacterium pseudocatenulatum strain 1896B Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 721040 33 100.0 34 ................................. TTACCACCTTGCAACGTGACGCGCCGCCCGCCAA 720973 33 100.0 34 ................................. CCAGTCCAAAACAAGCACAGCGTTTCCAACGTAT 720906 33 100.0 32 ................................. AATTCCCGGATAGGCTACGCGATTGTGATATA 720841 33 100.0 34 ................................. CCCGACTACGATTTTAGGGTGTATAACAAGGTGG 720774 33 100.0 36 ................................. GTGGATGATTTCGGCCTGAACCGTTTCGTCGCGCAG 720705 33 100.0 34 ................................. AGCCACTTGAAGCGAGATAGCGCGATATTCAGCA 720638 33 100.0 34 ................................. ACCACCAACGCCGGCACAAGCATTAACGTAGTCA 720571 33 100.0 34 ................................. CCCGACACGGATACGCACGTCTACGGACAATACC 720504 33 100.0 34 ................................. AATCTTTCCACGTCTGTCAAGTAAGCGTAGTTGC 720437 33 100.0 32 ................................. TCGATTGTATGCGTCGGCGCGGCGTGCGTCGA 720372 33 100.0 35 ................................. CGATAATCGCGGCTTATAACCTTATGTTCGATATG 720304 33 100.0 34 ................................. GCTCAGTGAGCTTTTTGACACTATCATGCAACGA 720237 33 100.0 35 ................................. ACGGTGCTGCCGTAATAGGATTGCAGAAATTTCAC 720169 33 100.0 33 ................................. TGTCAACCATTTTTGGCGACATAAATATTTATA 720103 33 100.0 32 ................................. TTCGTCATCAAATCATTAAAATCACTAAACGT 720038 33 100.0 34 ................................. ACGGAGAAACGCATGCATGCGCTGAACCATGACG 719971 33 100.0 35 ................................. GTGAAGGTAGGACGAATCGTCATGTATCCGAAGGA 719903 33 100.0 36 ................................. TGTTGAATAATCCCACACATCGTCGTGTTGTTGTTG 719834 33 100.0 35 ................................. ATATCGGCAAGCTGCATGGTCTGTTGGTTGGCCAG 719766 33 100.0 33 ................................. TCGCGCGGCGGAAATACAGCTTGCGGAGTTATA 719700 33 100.0 34 ................................. AGGGATCCGGCGGTTTCGTCAAGTCCGCAGCGCA 719633 33 100.0 34 ................................. GAGGTCTGTGGTGCTTACGATGATCAGCCCATAG 719566 33 100.0 35 ................................. GGTAGTCAGGACGGCCTGAACCTTGCCACCGCTGC 719498 33 100.0 35 ................................. CAAACCCGTGTCCCGTCCGTCACGCAGGGCAATAT 719430 33 100.0 33 ................................. TCCACGCTTGCGGGCACTGGCTCGCCGTTGATA 719364 33 100.0 37 ................................. GTGTCCTCGCTTTGATTCGGTACTTCCGTGGGCATGT 719294 33 100.0 36 ................................. CGCGAGTTTCGGTGTCTTGTTGATAGCTGACACGCA 719225 33 100.0 33 ................................. GCCTTATTGGCGGTGGCGTGATCGGTGGTGTCC 719159 33 100.0 33 ................................. ACGTAGTCGCATGTCTGGATGAAATAATACCAA 719093 33 100.0 34 ................................. AACATGGAGCGCAAGTCATGGACGATTACGGAAC 719026 33 100.0 34 ................................. ATCGACACCAGCACCCGTGAGGGTAAAATCAAGC 718959 33 100.0 36 ................................. TCTGATTTGGGTCTGTAGCTGAGTAAGGATCTGATC 718890 33 100.0 33 ................................. TGGACTGGCGAAGGGTCTGCCGAGTCGGTGACG 718824 33 100.0 35 ................................. CGAGATCTCCACCAAGTCCGGTGGCGGCGTGAGAA 718756 33 100.0 35 ................................. CGATTCGCTGATGAGGTCTTGCGCGCGGGTGTCGA 718688 33 100.0 35 ................................. CTTGGCCTGTCTGACATATTCCGCATGGAAGCCGG 718620 33 100.0 36 ................................. ATGACCTGTTGGCCATCCAGCCGATCAGGATGGCGG 718551 33 100.0 34 ................................. ACCGGATTCATCGAAACCGGAGACGACTCTGCCG 718484 33 100.0 34 ................................. GGTGACCATGGCCTCCAACTGCTGCAACGGGTCT 718417 33 100.0 33 ................................. CGGTCTGCTTGGTGTTTTGCTTGGCAACGTTTG 718351 33 100.0 35 ................................. GAAGCAGGAACGCCGCTGCCGCACGCAGACGGCGC 718283 33 100.0 34 ................................. ATTCCAAGTATGGTGAGTTTTTCGTATCGGGCGG 718216 33 100.0 33 ................................. ACCGACCACGGGCACGGATAGGGCGGCGGAAAC 718150 33 100.0 35 ................................. CGTCAAGCCATGCGATTTGCCGCAATATCGGATAG 718082 33 100.0 35 ................................. TGCTCATAATGACGAATCAGCGCAAGCATGATATT 718014 33 100.0 35 ................................. TGCTCATAATGACGAATCAGCGCAAGCATGATATT 717946 33 100.0 35 ................................. ACACTGATAGCGCTACCAAGTCGCATCATGTTTGC 717878 33 100.0 36 ................................. GGCTATTTTATTGGTTGTCCGAAATTCATAATCGGG 717809 33 100.0 32 ................................. ACAACGACGGACGGCACGCTTTTCCCTCACGG 717744 33 100.0 37 ................................. GGTAACCCGCCTAGCGGTATCCCCGTGCCGGTTCAAG 717674 33 100.0 34 ................................. GCCCATGACATTGCTAGGCTTGACGCGCCGGTAC 717607 33 100.0 35 ................................. TTTTATAAGGTGGTGAACATGCCTAGAGCGCATAA 717539 33 100.0 32 ................................. TTGCACTTTTAGTTGGTGAATTACGCGGTCTA 717474 33 100.0 33 ................................. TTGCGGTGTCATTTCTGTCAAGGGCGCGTGTCC 717408 33 100.0 32 ................................. CCCTTAATGTCAACACGTTCGTGGATGATCAG 717343 33 100.0 33 ................................. CATGTGTGTATGTGGCGTTTCGAGGGTGGTATG 717277 33 100.0 33 ................................. AGGTTCCATGTCGAGCATGGATGCCGCTTTTTC 717211 33 100.0 35 ................................. AGCGCAAGAACAATGCCGTGTGGCTGCTGACTATC 717143 33 100.0 34 ................................. GAGTCCCTTATCGCCCACTTCCCGGAATCCTTGA 717076 33 100.0 33 ................................. CGCGAGACCAGGGAGCGATGCGGTATCAGTCAG 717010 33 100.0 36 ................................. ATTATTGAGAGCACCCAATTTGGGTGCTCTCGCCAT 716941 33 100.0 34 ................................. AACAATCAGATGGCGCAATTGAATACGATTGGCG 716874 33 100.0 33 ................................. ACCTCGTAGAATCCGAAGCAGCCTTTCTCCACG 716808 33 100.0 36 ................................. ACTGCCGATGCGCGTAACATTCCGTCGGACATGTAT 716739 33 100.0 34 ................................. CCTCGGCTGATGAATTGCTTGTCGGTTCCGTCCG 716672 33 100.0 35 ................................. AGGAAGTGAAAGTGGAGAAGAAATGAAGCGTATTC 716604 33 100.0 36 ................................. GTGCCTTGCGTGGCGAATGCTTGTCGAAGGCTGGCA 716535 33 100.0 35 ................................. TCTTTCAGTGTATTGTATGCGTCGTTACGGCCACC 716467 33 100.0 33 ................................. GTGTATTTTGTCGATATTGCGTCCGATTGTTTA 716401 33 100.0 35 ................................. CGGCATGGCGTGCAAGTCATGGACGATTACGGGAC 716333 33 100.0 34 ................................. GGTGACAGTCCGGACGATAAACCCTCATGGCGCG 716266 33 100.0 31 ................................. CTTCTGTTGTTGTTGTTGGCCTTGCCGTCAA 716202 33 100.0 33 ................................. CATGGACATGACAACGGATAGCGAGAGCGGCAG 716136 33 100.0 34 ................................. ATCCCAAGGTCTTGCAGCCGGGCGGCACGACGCC 716069 33 100.0 34 ................................. CCCGATAACATGCGCTATCTCGGCGGGGAGGTTA 716002 33 100.0 36 ................................. TACGCTTTCTGCGGGCATGATACGTGGATAGGACAG 715933 33 100.0 36 ................................. ACTGCAATTCACTGCAATTACCGGAAAAGCGTGGGC 715864 33 100.0 33 ................................. CAGTGGCTCTGCGGCCTGCTGCACGCGGTGTGG 715798 33 100.0 32 ................................. TTGCAGTGCGCGAGGATGAGGTCTCGTTTCGA 715733 33 100.0 35 ................................. TCGAACAAGCGTAGGGGCGTGCACCGTTTTATGGT 715665 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 715597 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 715530 33 97.0 33 ....T............................ AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 715464 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 715397 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 85 33 100.0 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTTTGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //