Array 1 33042-33397 **** Predicted by CRISPRDetect 2.4 *** >NC_014749.1 Calditerrivibrio nitroreducens DSM 19672 plasmid pCALNI01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 33042 28 100.0 37 ............................ GGTTTCTTCCACTTTCTTTACTTCTTCTTGTATTTCA 33107 28 100.0 38 ............................ GTTAAATATTCAACACGTATGTCTTCAATAATGTTCGC 33173 28 100.0 37 ............................ TCAGGGTACGTAAGGGCAGTTTTGGACGTGGGGTTGA 33238 28 100.0 38 ............................ TTATGTCACCGGTGATCATCCAACTATGGGAGAAGCAA 33304 28 100.0 36 ............................ GTCGAAGAAAATGGATTTTAGAGAGGTTGGCAGAGA 33368 28 100.0 0 ............................ | TT [33390] ========== ====== ====== ====== ============================ ====================================== ================== 6 28 100.0 37 GTTTCATCTGAACCATGTGGGATTTAAA # Left flank : AGTGATAAAAGTTTAAAATATCATGAGAGAAAATTAAGGTACTCAAATATAATAGAGGAGACTCTTAATGGATAAAAATGCTTCAAGGGTGATGGTTGACACAATTAAGTTGACATTACCGGGAGTAGTCATTTACTTTAAATATTTTGGTAATTTATTTATCATTATATTATCCATTTTAAAGTCCTCCTTTGAACGGTTTTTTATCTTGTTCGTTGTAGATAAATACTGTAACTCTTAAAGGGGGATTTCAATGACATGACTAATTATACACTACCGAATCACCAAAGATTAGCATTGCATCGAAGCAGATTTTTGATTAATTTTACAATAAATTGCTATTTATATTTTTTTACGATTTTTAAAAAATTCTAAAAAATCAACTAAAGGTTCGATGCAAAAAAATTAAAATTTTCGGGGGTTGATTTTTTTAAGAAATTTTATTAACATGTTAATATAGTAAGCAAATTTAATATTTAAACAGCACCATGATATTTTGG # Right flank : AGCTTGGGACAAAAAATGGGGGCATTCACCCACCAGCTATTTTTAAAAAAGCTTTTTCATTGTTGATTTAGATATTTTCTTACCGTTTCTGGGTCAAAAGACTGCAAGTCTTTAGGGTGATATATTTATGCAGGATTATACTTTAATCTTGTGTCTGCTTGCTTTCCAACATGTCCAATATCTTGTATGACATCCTTAGGTCTTGCAATAAAGATTCTATCTCTGAGTCCGTCAAGAGTACTGAACCGCAGAAGGTAATTCGTTCTTCATTTTGAGGTTCTTTTGCTTGTTCCTGCGATGTCTGTTCATTTGAGGATTTTTTCGACTTCTTGACTGCCATATTTTTCCTCCAGTGTAGATATTTACTCAGGTATTATTCTTAATATATCTGAATTTCCTACTTTTGTCAAACCAAACGCACTTGCTGCCGTCACCCCATTTTTTGCACCTCTAAAATAAAAAATAAGTTCAAGGTTCTATGTTCAATGTTCTATGATCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCATGTGGGATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 1654556-1652589 **** Predicted by CRISPRDetect 2.4 *** >NC_014758.1 Calditerrivibrio nitroreducens DSM 19672, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1654555 36 100.0 38 .................................... TATTGCTGTCCTATCTACCCCTATGCGACGGGCTATTT 1654481 36 100.0 37 .................................... TTATTTTCATTTTTTTTTATCAAAGCGTCTTTTTCTT 1654408 36 100.0 38 .................................... GTTTATCTTTTATTTTTAAAATTTCTTTATCGTATGTA 1654334 36 100.0 39 .................................... TTAATCTCTTGACAATTTCCTCTGCCAGATGCCCTCTTA 1654259 36 100.0 39 .................................... GAGGATTATTCCTTCCTCTAACAGTTTTAAAACTTCATC 1654184 36 100.0 40 .................................... CCATCATATCTTTTTTTATTTTTTCTTTCTCTAATTTTCT 1654108 36 100.0 41 .................................... ACGAGAAAGGTATCATTTTCATAAACCGCATCCACAATATG 1654031 36 100.0 37 .................................... AATCGCTCTCGCAAGAACTCCCGAGCTATAGGGGTTA 1653958 36 100.0 37 .................................... AATCAAAATCAGGCTTAGCGTATATAGACACATCTAA 1653885 36 100.0 39 .................................... ATAGCCCCTTTTTATTTTTTTATGGGGCTTTAATAGCCC 1653810 36 100.0 37 .................................... ATACTCACCACAATACTCACAATAATACAGATAATCC 1653737 36 100.0 39 .................................... TTATCTATTTGCATAAAATGAAGGTTTGTAAACTGGATC 1653662 36 100.0 40 .................................... TTGTTAGCGTTAACAACTATAGAATTTTTATTTATGATTA 1653586 36 100.0 39 .................................... ATAATCCTCCCCCTCTCTTACTACTTCTCCACAATTTTC 1653511 36 100.0 36 .................................... GTGAAACCCCTGTCTATTTTCCAAAAATGTAATGAA 1653439 36 97.2 39 .........................A.......... AAAAATCGTCAATGATTTCATTGCAAGCTATACATCTCA 1653364 36 100.0 38 .................................... TATCTCATCGTTTTTTCTAATAAAAAAAACATATCCGT 1653290 36 100.0 38 .................................... TATCTCATCGTTTTTTCTAATAAAAAAAACATATCCGT 1653216 36 100.0 41 .................................... TTTAAGTTCTTCAGAGGTCAACTTAGCTAGTGTAGATTTTC 1653139 36 100.0 41 .................................... TTTCCTACATATTTTTCAATCATATTTTTTAACTCCATTTT 1653062 36 100.0 39 .................................... TTTTTATTTTAAACATAACTAATCTTTTGGGCTTACTCT 1652987 36 100.0 36 .................................... TTGGATCTGCATATATGCTCACATCTATTTTCTTTT 1652915 36 100.0 38 .................................... CTATTCTCGGTCAGACTATTTTGGTTTATACTATTATT 1652841 36 100.0 38 .................................... TTGATCTCATCCTGGTTTAATTTAACCCCGACGTATCT 1652767 36 97.2 34 .......T............................ TTTTTAAAACTTCTTTTAGCCTCATAGCTTCCTC 1652697 36 97.2 37 .......T............................ CAACTGAGCTATTAAGTTCAACTCTTGATGTCTGTAA 1652624 36 97.2 0 .......T............................ | ========== ====== ====== ====== ==================================== ========================================= ================== 27 36 99.6 38 GTTGGAAACATTGACCTGACTTTAAGGGATTGCGAC # Left flank : CTGGGTATGGCAATTGGAGACTATAAAAAGATATTAGTTTACAATTTTGACAAGCAAATCGGAAGTTACATTAAAGTATTTGATTCAGACTTAAAAGAAGAGCTGCCAATGAATGCTTTTTAGTTTTTTTGATTTTGTTGAAATAATTAGAAAATATGCTATAAAATAATTATCTAAAAAGCTGTGTGATTGACAATTGAATATGTGGGGTCATAGAAGGGATAATGATACTTGAGTGCGATTGTATCAACTTTATGAGTCTGATTGGCTCAAGTGTTTCGTGTTGATTTTAGAATTGTTTTAAGAATTGTGTTTTGTTATATTTATCATTAAGTTGCGAAAAATAAAACAAAAATCAACACGAATTTTATTTTGATTCATTATCAATGAGTTATAAAATTGACCATAAAATTTGGGGGGTACACCCCCCTCCCCCCAGGGGGGAACACGAAAATAGGGGTTGCAACTCATTGAAAAATGATATATAAAAAAAGGGTACT # Right flank : GGAGGCTACTTCAGTCACTGGATGAGATAATAAAGTTGGAATCATTGACCTGACTTTGCGCAAGCAAGGAACAGAAACATCGGGCAAATATAATCCCGATGTTTTTAGGGATTGCGACTGTATTATCGTAGAGACGCCCAAGTTGGGCGTCTCTATAGTCAGAATCACTGTCCTACCTTTTTCTGACTAACGTTAAAACGTTGAACATTGAACATTGAACTTCTAATATTTTGACCTGACTTTGTGAAAATTACATTATAACGTTAGCACGTTAACAAGTTGAAACGTTAGAACGTTAGAACGTTGAACGTTGAACTTTTAATATCATTGACCTGACTTTGCGCAAGCAAGGAACAGAAACATCGGGCGAATATAATCCCGATGTTTTTAGGGATTGCGACTGTATTATCGTAGAGACGCCCAATTTGGGCATCTCTACAGTCAGAATCACTGCCTTACCTTTTTCTGGGTAACGTTAAAACGTTGAAACGTTGGAACGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAAACATTGACCTGACTTTAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1990498-1990853 **** Predicted by CRISPRDetect 2.4 *** >NC_014758.1 Calditerrivibrio nitroreducens DSM 19672, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1990498 29 100.0 37 ............................. TGCTCTGTCGTACAAATTTAGGAGTGGCAGAGGATCG 1990564 29 100.0 37 ............................. TTAAAGCTTGCGACAGAGATCTTAACAAGCTCTTTTT 1990630 29 100.0 36 ............................. CTAAAACTGTAGTTTTCCCCGTTCCTGCATACCCCT 1990695 29 100.0 36 ............................. ATATTTTTTGTGTAAAAAAAAATTGATGTCAAAAGC 1990760 29 100.0 36 ............................. CGAGCTACAAAAACTACAACAAAATCGCTACAAGAT 1990825 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 37 GTTTCATCTGAACCATGTGGGATTTAAAG # Left flank : TTATGTGGGTTCAAAATTCTGTTTTTGAAGGTGAAATTACAGAAGGCAAACTAACTCAATGTAAGCTTGAACTTGAAAAAGTAATAATAAAAGAAGCAGATTCTATTTATTTTTATAGGATTGAAAATCGGTTAAACTATAGGAAAGTCGTACTTGGTGTAGAAAAAGATATGACAGGCAATATATTATGAATTGTAAATAGTCTTAATTTAGATTTAATGTCAACGTTCGTAAAACTTTTTTATTGTTTTAAACAAAATGTCGTCGATGAAATTAGAAGAATCACTAAAGATTAGTATTGCATCGAAGCAGATTTTTGATTAATTATACAATAAATTGCTATTTATATATTTTTACCACTTTCAAAAAATTCTAAAAAATCAACTAAAGGTTCGATGCAAAAAAATTAAAATTTTCGGGGGTTGATTTTTTTAAAAAATTTTATTAACATATTAATATAGTAAGCAAATTTAATATGTAAACAGCACCATGATATTTGG # Right flank : GGAGGTAAAATTCAAATTTGCAGACACAAAGGCATTGGGTATATATGCAGATAGCGAATTGCCAACAGGATTGGATAAGTTGGAAAGTAAGATAAAATTTAATAGCGTGTATCCAGACTTTGTTGCTCTTGCAGCAGATCCTTTTACGAGTAGAACAGTAATTGTAAGAGCCCCATATCAGGTGTGGACACAGAATGGGGTATCGAAAACGGCATCTCTTAAGGCGGAGATGAAAGGTTTCTTTAAAGAGTTTGACTCTGCTAAGTTTAAAAAAGCAGACTCTTCTGAGGCTGAAGCTACTATGAGTGTTCTTTATTACAAGCTTGAAGTTGATGGAGTTGAAGTAGTCGAAATCGATACGCTTAATAACATTTATAAAGTGAAAGGAAAAGATCTTATGCGTGATTATGTAACAGCAATAGGGGGGTAATTTGCATGAAAGAGATAAACTTAAGCGACGGTAGAAAAGCAACGATACAGCAGGGTAAAGGCAAAGATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCTGAACCATGTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 2109900-2111119 **** Predicted by CRISPRDetect 2.4 *** >NC_014758.1 Calditerrivibrio nitroreducens DSM 19672, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2109900 36 100.0 39 .................................... AAAGAACCTATTTTTTTATTCATTACTTTTGCACTTTTG 2109975 36 100.0 39 .................................... ACAGAAAGTGTATTTATCAATACACTCCCCGCAAAAATC 2110050 36 100.0 37 .................................... AGTAAACTAATTCCTCTTTGCTCGCCGTAAATGAAAG 2110123 36 100.0 39 .................................... ATGCTTCAAACAGATTTGCTAAGAAACGAGCTTTTTTAT 2110198 36 100.0 40 .................................... TCCTTCGTGGAAGGATTAACTCCATTTTTCATTTTCGTAG 2110274 36 100.0 39 .................................... AAAATTCAATAGCCTCTTCGCTCCATTTATAAAAACCCC 2110349 36 100.0 39 .................................... TCAATTCCTCTTTCTCTTCCTCACGCATTATCGTATTAC 2110424 36 100.0 34 .................................... CAATTTTTTCTGGGGAGGCTTTAACCTTATGATT 2110494 36 100.0 38 .................................... AGAATTTATCCGTTCTTAATTCCCAGAGCTTTTGTATT 2110568 36 100.0 36 .................................... GCCCGTGGGAGAGTACGAAGTCTTGGCTTTGGAAGG 2110640 36 100.0 34 .................................... GTGTGTTTTGTAATTTTCCCACAATTTCTTGTGG 2110710 36 100.0 41 .................................... CAATGGAGGGGGAGCCAGACTTTATCTCCCTCCACTTCGAA 2110787 36 100.0 39 .................................... CCAGGGCTGCCCTTATATAACCCTCAGGGAGCTCCCGCT 2110862 36 100.0 39 .................................... TATTTTATTTTATTTTTATCTTCCTTCAAACTCCTCAAT 2110937 36 100.0 38 .................................... GCTTGCAAGCTTGTATTTTGCATAACATTTGCCATCTC 2111011 36 100.0 37 .................................... CTTACAAAATTGTTGTTACTGAAACCAAGTTTTTTAG 2111084 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 17 36 100.0 38 GTTGGAATCATTGACCTGACTTTAAGGGATTGCGAC # Left flank : TTTTATGTTTGGGCAAAATATAATAATTATATAAAAATTGCGTGATAAAATATAGTACTATCGATATAAATCAAATATAAAACTTTTTTGGAGTAGAAGGTAGTGTCAACATAATTATGTCATTAACCATCCATAGTTGAAATTATCTCTAAAATATGCTATAAAATAATTAGCTAAAAAGCTTTGTGATTGACAATTGAATATGTGGGGTCATAGAAGGGATAATAATGCTTGAGTATGTTCATATCAACTTTGTGAGTCTGATTGGCTCAAGTATTTCGTGTTGATTTTAGAATTTTTATAAGAATTGTGTTTTGCTATATTTATCACCAAGTTGCGAAAAATAAACCAAAAATCAACACGAAATTTATTTTCATTCATTATCAATGAGTTATAAAATTGGCCATAAAAATTGGGGGGTACACCCCCCTCCCCCCAGGGGGGAACACGAAAATAGGGGTTGCAACTCATTGAAAAATGATATATAAAAAAAGGGTGCT # Right flank : CCTATCTATCAACTTAACTGCTTCATCGCCGTAATGTTTGTTGGAATCATTGACCTGACTTTGCGCAAGCAAGGAGCAGAAACATCGGGCTAATATAATCCCGATGTTTTTAGGGATTGCGACTGTATTATCGTAGAGACGCCCAACTTGGGCGTCTCTACAGTCAGAATCACTGCCTACCCTTTTATGAGTAACGTTGAAACGTTGATACGTTAACGTTAGAATTTTAGGACGTTGAACGTAGAACATTGAACTTAGAACATTGAACTTAGAACTTTTAATATTTTGACCTGACTTTATGAAAATTACGTTTAAACGTTGAAACGTTAGAACGTTAGAGCTTAGAACTTTGAACATTGAACATTGAACCTTGAACGTAGAACTTTGAACTTTTTTATCATTTGACAATTTATCATATTAGACTATAATTATTTACATAAAGTATTATTATCTGGAGCAAATAATGAAAAAACTGCCAATAGGGATACAGAATTTTAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAATCATTGACCTGACTTTAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //