Array 1 420360-422462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPR010000002.1 Salmonella sp. 32082101-2019-00528 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420360 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 420421 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 420482 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 420543 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 420605 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420666 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 420727 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 420788 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 420849 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 420910 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 420971 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 421032 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 421093 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 421154 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 421215 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421276 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421337 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421398 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 421459 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421520 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421581 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 421642 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 421703 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 421764 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 421825 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 421886 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 421947 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 422008 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 422069 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 422130 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 422191 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 422252 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422313 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422374 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 422435 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440095-442076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPR010000002.1 Salmonella sp. 32082101-2019-00528 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440095 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 440156 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 440217 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440278 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440339 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 440400 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 440461 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 440522 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 440583 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 440644 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 440705 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 440766 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 440827 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 440888 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 440949 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 441010 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 441071 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 441132 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 441193 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441254 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441315 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441376 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441437 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 441498 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 441559 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 441620 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 441681 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 441742 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 441803 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 441864 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 441925 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 441986 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 442047 29 100.0 0 ............................. | A [442074] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //