Array 1 6046-378 **** Predicted by CRISPRDetect 2.4 *** >NZ_QNJE01000083.1 Xanthomonas oryzae pv. oryzae strain GD411 scaffold82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 6045 31 100.0 34 ............................... ACCATTGGTGGTGAAAAGGGCAATGGCATGTATC 5980 31 100.0 35 ............................... ATCATCGTCGGTGGTGTGGGTATCTACTTCTTCGT 5914 31 100.0 34 ............................... ATCCACTCGCCGCCGGTGCCCTGCACAGGGTAAT 5849 31 100.0 35 ............................... ACCAGTGCCTGTACCAGCACCTTGGTGTCGGTGTC 5783 31 100.0 36 ............................... GCAATTGATCCCGCCCCCAGGGCAGCAGCCACGCCA 5716 31 100.0 34 ............................... TTCGTCTTTGGCAGCCCTTTCTGCTTGCCACCTG 5651 31 100.0 36 ............................... AGCTAAAGAAGAAGTCTGCTTCCATGACCTGGACAA 5584 31 100.0 36 ............................... TTGCTATAGAACAAACCAAGCTCCCGGATCCTGGGG 5517 31 100.0 34 ............................... GCAACCACATCCTCAACAGCAGTGCCGGTCGCTA 5452 31 100.0 34 ............................... ATGTACGAGGCAAGCTGCGGAGCATCCGACAAGA 5387 31 100.0 36 ............................... TTTGCGTCCAGGCCCAAATGCAAGCATGTCAATGCA 5320 31 100.0 34 ............................... CAGAAGCTCACAGCCAACCCGCAGAGACAGCCAT 5255 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 5188 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 5123 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 5057 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 4993 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 4929 31 100.0 35 ............................... TGGATGTTCGTAGAGTACCCCGAACCGACGCTTAT 4863 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 4798 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 4734 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 4669 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 4605 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 4541 31 100.0 34 ............................... TTTCCAAAGACCCATAGAGTTCAGGTGTGCCGCT 4476 31 100.0 35 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGCA 4410 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 4345 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 4281 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 4214 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 4150 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4083 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4018 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 3952 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 3887 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 3823 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 3757 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 3692 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 3627 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 3560 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 3492 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 3427 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 3361 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 3296 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 3229 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 3162 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 3097 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 3030 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 2965 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 2900 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 2835 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 2769 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 2704 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 2640 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 2575 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 2510 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 2444 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 2378 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 2311 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 2246 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 2180 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 2114 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 2049 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 1982 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 1916 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 1851 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 1784 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 1718 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 1652 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 1585 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 1519 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 1454 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 1390 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 1325 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 1260 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 1194 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 1128 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 1063 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 998 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 932 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 866 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 802 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 735 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 670 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 605 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 538 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 473 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 408 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 87 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //