Array 1 105072-105639 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEU01000002.1 Yersinia pseudotuberculosis strain No5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105072 28 100.0 32 ............................ GTCGCCATATACTGAGCTATAACGCTGCTCAT 105132 28 100.0 32 ............................ ATCAGCACCAAGATGCCTAGTTATTCCCATGT 105192 28 100.0 32 ............................ GCAATGCTTCCGGCATCTTCAGGAATTGCTGA 105252 28 100.0 32 ............................ AGTTGAAGATTGAGCCTCTTTAAATGTGAAAC 105312 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 105372 28 100.0 32 ............................ TGATACAATCATCCTATTTGTCCTATCCAGAA 105432 28 100.0 32 ............................ TCGCTCAGTATCGACCCCGCACGCCCGTTGCA 105492 28 100.0 32 ............................ TGGAGTCACTTTACGAATATGGAACTCGTGCT 105552 28 100.0 32 ............................ GACCGCTGAAGACGTCAAATCCATGCGCATCA 105612 27 89.3 0 .....................CC.-... | T [105638] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACG # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGTAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCACTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGAAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 118487-117739 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEU01000003.1 Yersinia pseudotuberculosis strain No5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 118486 28 100.0 32 ............................ TCGAGCTGTCAGCAGTTGATTTCGGTGTTATC 118426 28 100.0 32 ............................ TATTTCGCCAAATGAGTTTTTACCATCACCGC 118366 28 100.0 32 ............................ CAGCTAAATATCGGTTTGAGGAGCGAGAAAGC 118306 28 100.0 32 ............................ ATTGCCCCTGTTCGCGGGGGTTCTGGAAAGTT 118246 28 100.0 32 ............................ ATCAGCATACCGTGCGTCTGCAGGATATCTTT 118186 28 100.0 32 ............................ CATAAGATAGCATCCCCATTCTGGATTGAGCT 118126 28 100.0 32 ............................ GGTATCATTGCTGTCCAAACCCATACCGCTAA 118066 28 100.0 32 ............................ AGTACACAGCAGGAGACGTGCGATGAATTTGG 118006 28 100.0 32 ............................ TGGTCAAGTTATTGATTGCAGAGCGTAGCCCG 117946 28 100.0 32 ............................ TTAAAAGCATTGTGTAACCGGTAGCGCTTCAC 117886 28 100.0 32 ............................ TGCAGACGTTGGTCGATGGCTGCGAAACGTTC 117826 28 100.0 32 ............................ AATCTGTATCCGATTGATTATCACTATCAAGT 117766 28 92.9 0 ........................T.G. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTTGCCGCAGGAGGCGATATCTTACCGACTCGGCGGGGAGGCATATTCACTTCAGTTCCTGATTTTACTAGCGAGCTGACGAATCCACCGATGATCGTGGCCCATGCAATGACTTGTAGATTCACTCTTTTTTCAGACATAGCCAAAGTTCTCCTCTCGTTTTTGCATGGAGAATTTTACAAAAAAGATAAAAAAGCGTTAATAGGCGGTAAGGGAAAAATGGTGGAGTATTCGATTCAGTAAAGGGAAGGCAAGTGAAAAATACAGGTTCAGGGGAGTGGTTATCGCGTTAAAATCAGCCCGTGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGAATCATTTTTTAACCCTATTTTTTTAGCTATGGCTAACTCATTGATTTTATATCCTGCTTACCGAGGGTTAAAAAAAATCATTTTTTACCCTTTGGCGAAATAATTATTTTACAAACAGTCTGTTACCCGTATTATCTTACT # Right flank : GGGTCACTGTCTGTGCACTAGCGCGGCCCCGGCCTGCGCCTCCTGCAAGTAGGCCAACGCCACGACCAGAGACTGTACCAGGCAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTACGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATACCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCCAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCACGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGCAGTGCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 158250-156301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEU01000007.1 Yersinia pseudotuberculosis strain No5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 158249 28 100.0 32 ............................ CACTGCCAGATTACAGGCACAAAAAACCCGGC 158189 28 100.0 32 ............................ CAATTGCACAGCAAAGTGGTCACGCTTTTCGC 158129 28 96.4 32 A........................... TGCAATAGCGAATCCGGTAGACCATGCGCCCA 158069 28 100.0 32 ............................ ACGGTCGCTACTTGTCCGTACTGGGCCGTGGT 158009 28 100.0 32 ............................ ATGTGGTTGAGAAAGAAATAAGAGAAGGAAGA 157949 28 100.0 32 ............................ GAAGATGAGGTTGAATGCTCATTCAAAAGGAA 157889 28 100.0 32 ............................ CATACCGAACTCAGATATTGTGATAAGCGCTT 157829 28 100.0 32 ............................ CGGTAGAATTCGTGGGTTACATGCTGATTAAC 157769 28 100.0 32 ............................ AAATGGTCAGCAATATCCTGATAGCGGGTTGT 157709 28 100.0 32 ............................ ACATGTCAGTAAATCCGGCACAAGTAACAAAG 157649 28 100.0 32 ............................ AATTGGTACCGCATAGACGGTTATGTCTGTGC 157589 28 100.0 32 ............................ TTGAAGTACATCGAGGTATCGTGAAGCCAATA 157529 28 100.0 32 ............................ ATAAGCATCCATGCTTTATTAACAAAAAGTGC 157469 28 100.0 32 ............................ CAGAAGAACCTAGGCATCCTGCTGCCTACGAT 157409 28 100.0 33 ............................ CGAGTCCGCCGGCAGCGGCCACAATCTGGCTCC 157348 28 100.0 32 ............................ TTTGGTTTTGCTACCACTGCGGCCGGCACTAA 157288 28 100.0 32 ............................ AATCAGACAGGCCAGACTCAGCTAGCCCAGGC 157228 28 100.0 32 ............................ TTCGTCAGTTATATATTTACCGCCACTGATTT 157168 28 100.0 32 ............................ TTGCGCCAGATGTTGAATATCTATCATGTCAT 157108 28 100.0 32 ............................ GCAAGATGTCAACGAGAGGCGGGGATCGGATG 157048 28 100.0 32 ............................ TGCTTATGCGATGCAGGAAATATGAGCAGGCT 156988 28 100.0 32 ............................ AACGTTAGGGATGCTCTCGGTGCTGGGCTTAA 156928 28 100.0 32 ............................ TCGGTCATTCTGTCGGCGGGAACATCCAAGTC 156868 28 100.0 32 ............................ GCCCGAGTTCGCCACTGACACCCAGCAGGAAC 156808 28 100.0 32 ............................ TACCGGTAATCGGCGTTTTCGCAAAAACATCC 156748 28 100.0 32 ............................ TATAGCAAACCAACAACTGCCGTTTTGATCGC 156688 28 100.0 32 ............................ ATTGCGCGCTGCCACTTAGCATTATCAACAAG 156628 28 100.0 32 ............................ CGGGTGAAAAGTCGGTACCTGCGAATCGGCAG 156568 28 96.4 32 ...........T................ TATACACGCTGTGCTCTTTATACTGAAGTTAT 156508 28 96.4 32 ...........T................ CATGCGCCGCACGTTACCGTTAACGTCGATGC 156448 28 100.0 32 ............................ TGACATCATTCTCAGCCAAGTGGCCAATCACG 156388 28 96.4 32 ...........A................ ACTTTAATTTGCAGATCTGCAAAAAGGGGACG 156328 27 85.7 0 ...................A-.A.T... | C [156304] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATCTCATTACGCGATTTATCCACAACCTCCTGTTCACTGCCGCACAGGCAGCTTAGAAATAACGTATCAAGGTTTAACATTTATGCCTCGCGTTCACTGCCGCACAGGCAGCTTAGAAAATCACACATAATGTAAATACCGACCGTGCCCAGTTCACTGCCGCACAGGCAGCTTAGAAAGAACAACCCGCTTCCTGCCGTTCTCTGTATATGTTCACTGCCGCACAGGCAGCTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTCTGGGCCATGCGCTGATACTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACAGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGCGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGTTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGTCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 158779-158510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQEU01000007.1 Yersinia pseudotuberculosis strain No5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 158778 28 100.0 33 ............................ CCATCTCATTACGCGATTTATCCACAACCTCCT 158717 28 100.0 32 ............................ TAACGTATCAAGGTTTAACATTTATGCCTCGC 158657 28 100.0 32 ............................ ATCACACATAATGTAAATACCGACCGTGCCCA 158597 28 100.0 32 ............................ GAACAACCCGCTTCCTGCCGTTCTCTGTATAT 158537 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGGTTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCACTGCCGCACAGGCAGCTTAGAAACACTGCCAGATTACAGGCACAAAAAACCCGGCGTTCACTGCCGCACAGGCAGCTTAGAAACAATTGCACAGCAAAGTGGTCACGCTTTTCGCATTCACTGCCGCACAGGCAGCTTAGAAATGCAATAGCGAATCCGGTAGACCATGCGCCCAGTTCACTGCCGCACAGGCAGCTTAGAAAACGGTCGCTACTTGTCCGTACTGGGCCGTGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //