Array 1 189668-188051 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIDJ01000004.1 Salmonella enterica subsp. enterica serovar Derby strain ISU-SAL242-16 NODE_4_length_259467_cov_27.4804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 189667 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 189606 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 189544 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 189483 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 189422 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 189361 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 189300 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 189239 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 189178 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 189117 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 189056 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 188995 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 188934 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 188873 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 188812 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 188751 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 188690 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 188629 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 188568 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 188507 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 188446 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 188385 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 188324 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 188263 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 188202 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 188141 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 188080 29 93.1 0 A...........T................ | A [188053] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 206946-206308 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIDJ01000004.1 Salmonella enterica subsp. enterica serovar Derby strain ISU-SAL242-16 NODE_4_length_259467_cov_27.4804, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206945 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 206884 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 206823 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 206762 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 206701 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 206640 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 206579 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 206518 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 206457 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 206396 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 206335 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //