Array 1 642317-641373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWOZ010000006.1 Ralstonia pseudosolanacearum strain PD:7123 IPO4001-PB17_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 642316 29 100.0 32 ............................. ACCCCTTCCTTGTCGCCGGCCCAGATGGAGAG 642255 29 100.0 32 ............................. GACCCAAACGACCGAACGAGGGACTGCCGAGC 642194 29 100.0 32 ............................. GGGATCGTCTCGGCGCCCGGCGGGAAGACACC 642133 29 100.0 32 ............................. CTGTTCACGCAGTTCTTGCGCCTGGATTTTTC 642072 29 100.0 32 ............................. TAATTTCGGCCTACTGCCCGGGGTAAACTTTG 642011 29 100.0 32 ............................. CGCGATCATTGCGCTTGCCCTGCAGCTGGGTC 641950 29 100.0 32 ............................. CCCTTCAATGTGCCCGAGTACCGCACGGTCAA 641889 29 100.0 32 ............................. CCGGCGTTGGTCGTGAGGCCCCGGTATTGCTG 641828 29 100.0 32 ............................. TTCATTGCGATCCCCCAATGCCCCGGAATCCC 641767 29 100.0 32 ............................. TTGAGCGAAGAGCAGCGTGAAATGGTGATTGA 641706 29 100.0 32 ............................. TCGGAAGCGGCGTACTCGGGCGGTCGCATCAA 641645 29 100.0 32 ............................. GACACGTATGCAATGGTCAGGGCAGCAGGATA 641584 29 100.0 32 ............................. ATGTACGCCACACGCGCACCCTCGTCGGCGGG 641523 29 100.0 32 ............................. TCGATGATCACGGATATCAAGGTCCGGGTGAA 641462 29 100.0 32 ............................. GCCGAGGTTTCCCGCGCAATCTTATGAACGCA 641401 29 93.1 0 ........................TC... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : CCGCATCATCCCGGCCATCGAAGAGGTGCTTGCGGCAGGCGGTATATCGCCCCCGGAGGCACCCCCGGAATCCGTGCCTCCCGCCATTCCCAACGCCGAGCGTCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTTGCCATCTGGCTGCTGGAGGTGCGTGCCGGTGTATACATCGGCGATGTCTCCCGCCGCACGCGCGAAATGCTCTGGGAGCAGTTGGTCGAGGGGCGCGAAGGCGGCAACGTCGTCATGGCCTGGGCCAGCCAGCACGAATCAGGCTATGAATTCCAGACACTGGGTGCCAACCGCCGGCTTCCAGTCGAATTCGATGGACTGCAGCTCGTGGCCTTTCAGCCGGCAGACAAACCTGCTCTTTGACAACGCGAATAATCGGTGCCTTTTAGGTGGTGGAAATTTCGCTTCTTAATCAGGGGCTTGGGTTAAGT # Right flank : TCGACTTCGCCGCAGGATTGGATCAGCCCGCCAACGCCGCCCGCGCAGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAGCGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 653559-651698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWOZ010000006.1 Ralstonia pseudosolanacearum strain PD:7123 IPO4001-PB17_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 653558 29 100.0 32 ............................. GCACGCAAATACATCAGCCGTCTGCACATCCT 653497 29 100.0 32 ............................. GCGGTCTCTTCGACCGCCGCCTCTATGGATCG 653436 29 100.0 32 ............................. TGACCGTGAAAACCACGGGCGGCTCGCCGACG 653375 29 100.0 32 ............................. ACCTCCCCGCCACCGCCGAGGCGTCGGCGCCG 653314 29 100.0 32 ............................. TTCATGGAGACGTTCCGTACGCTCGGCTTGAG 653253 29 100.0 32 ............................. GCTGTTCGCGCCTGTCGCAGAGCCTTTAGCCG 653192 29 100.0 32 ............................. CCGATCTTCAATACGAGAGACCTGCTCCCGCT 653131 29 100.0 32 ............................. CCGATCTTCAATACGAGAGACCTGCTCCCGCT 653070 29 100.0 32 ............................. GCAACCAGAATCGTTGTTTGTCCATACAGAAC 653009 29 100.0 32 ............................. CGGTGCCTCCTCTATACCGACGCTACCAACGT 652948 29 100.0 32 ............................. CAGATGACCGTCGTAAGGGTTCGGCTTCTTGC 652887 29 100.0 32 ............................. CACGGCTACGCAGGTTGTCCTCATCGGCCCCT 652826 29 100.0 32 ............................. CCTTTTCCGAGGGGGAGAACAGCGTTGGTAGC 652765 29 100.0 32 ............................. GCTCAGCATACGGACGCCCCATCCCAATCATA 652704 29 100.0 33 ............................. GGCAGGGACTTGCCCCTCATCATGGCAACCGAC 652642 29 100.0 32 ............................. TCGATCCCGACTTGGGCTTTGACCTTCTTTTT 652581 29 96.6 32 ............................C TGAGCGCATTACCTGTGCGGCCATTGACCGGT 652520 29 100.0 32 ............................. TGCCCGTGGTTGTCGTGGCCTGCCAATACGTG 652459 29 100.0 32 ............................. GCCAAAACCAAGGGCACCTACGCTGGCTGAGC 652398 29 100.0 32 ............................. CAGGACGACCAGTGCTCGGGCCATGAGACGCG 652337 29 100.0 32 ............................. CGCGCCACCGAGTTCATCGTGCGCACGGCGGA 652276 29 100.0 32 ............................. GCGCCAGCCGATTGGTTTTGGCTCCTCGGCTA 652215 29 100.0 32 ............................. TCATCGCGGAAATTCACCTTCCGTACGACGTG 652154 29 100.0 32 ............................. CTGAGTTTTCGTCCGGCCAGCGGGACAACATC 652093 29 100.0 32 ............................. ATGACCGAGGCAATGAATCGTGCTGGGGGCAG 652032 29 100.0 32 ............................. TCGGCCCATTGCGTTATAAATTCACGTTTGCC 651971 29 100.0 32 ............................. CAATTCGGAGCCAAGATTGATGGTGTGACGGA 651910 29 100.0 33 ............................. AATTACAAAGACAGCCTCGATGAGCGGCTGGAG 651848 29 100.0 32 ............................. AGGAAGGCGAAGTCGCGGAAGGGGCCCTCTTC 651787 29 86.2 32 A..........A.A..............A GTGCGCGAGAACGGCGTACCGTTGACCGTCCC 651726 29 93.1 0 ..............C.............T | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : GTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATCGAGGGCAAGCTTGGCTACTTTGTCGACTGCGTGCGGTAGGGCATCGCTGCGAGCTTTTGCCCCTGAGGTCAGTTGGTAGATTTTTGGGGGGCGATTTTTTGGTTTTGGATCAAAGGCTTGCGTTAAGT # Right flank : TCAACCAGCCCCAGCTCCCTGACCGTCTTCCGGAGAATGAAGAAAGTCCACGCGGACTCGTGCTTTCCAATATCCCACTTGGGCGATCTTGATATTTTCTGAGGCCATCGACAAAGAGCAGAAATAAATACCCGCGAGACTGTTACGATCACCCGCTCGGAAGCCGGCAAAGATAATAAAATTTCCTGACACCAAAAAAGTCATCAGGCTGACATGGCACAAGGGGCGTCGCGATATTTTGCATATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCGCTATCACCTGCTTGTCTTTCACGCATTGGATGTGGCGGCTTGTGGTGCAGAGCTGTTGCGTTTGCCTCGATTTTCCCTTGCGCCCATGGCTGCGGAGCTTGGTTGGCCGTTAGCCGTTGTCAATCAAATATTCACGTGGTTCTTGGCGTTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCGGGTTTATCGCCTGATCTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //