Array 1 5327-4201 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDX01000030.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2251 NODE_30_length_58835_cov_4.17165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5326 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5265 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5204 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5143 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5082 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5021 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 4960 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 4899 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 4838 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4777 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 4716 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 4655 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 4594 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 4533 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 4472 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4411 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 4350 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4289 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4228 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 107875-106211 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDX01000014.1 Salmonella enterica subsp. enterica serovar Heidelberg strain BCW_2251 NODE_14_length_119983_cov_4.49636, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107874 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 107813 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 107752 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 107691 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 107624 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 107563 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 107502 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 107441 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107380 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107319 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107258 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107197 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107136 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107075 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107014 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 106953 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106892 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106831 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106770 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106667 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106606 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106545 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106484 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106423 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106362 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106301 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106240 29 96.6 0 A............................ | A [106213] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //