Array 1 5597-6906 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETV01000077.1 Salmonella enterica isolate STY123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5597 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5658 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5719 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5780 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5841 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5902 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5963 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6024 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6085 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6146 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6207 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6268 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6329 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6391 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6452 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6513 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6574 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6635 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6696 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6757 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6818 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6879 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1050-3014 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETV01000027.1 Salmonella enterica isolate STY123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1050 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1111 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1172 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1233 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1294 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1355 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1416 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1478 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1539 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1600 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1661 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1722 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1783 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1844 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1905 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1966 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2027 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2088 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2149 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2210 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2271 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2333 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2436 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2497 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2558 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2619 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2680 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2741 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2802 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2863 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2924 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2985 29 96.6 0 A............................ | A [3011] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //