Array 1 190318-194256 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOQM010000004.1 Acinetobacter baumannii strain BA20475 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 190318 29 96.6 31 ............................G TAACGCTGGTACTCTGTACGTTCTACGTTAA 190378 29 100.0 31 ............................. TCAAGAGAAGTTTTATAGTGTTCGTGTATCT 190438 29 100.0 31 ............................. TTCACTGGATTACGTTCTAAGCCTTCCTGAA 190498 29 100.0 30 ............................. ATAAGCCTTATGAGGTAGATACTTCAAAAA 190558 29 100.0 30 ............................. ACTCGGTCACAAGGCGTAGTCTACGGTTTT 190618 29 96.6 29 ............................G TATCGATACGCCAATGAAGCTATCAGAGT 190678 29 96.6 30 ............................T CAATTGGAACGATATCAGGCTAATAACTAC 190738 29 96.6 30 ............................G GTACAAGCCATCACATGTATCTGCTAGTTC 190798 29 100.0 22 ............................. ACACATGCCAGATGGTTCAAAT Deletion [190849] 190850 29 96.6 29 ............................G TATCGATACGCCAATGAAGCTATCAGAGT 190910 29 100.0 30 ............................. GTAGGAAGCTCTACATCTAGTTTTAAATAG 190970 29 96.6 30 ............................T ATGAGTGAGGGAGTAGCAAATGTCTGAACA 191030 29 100.0 30 ............................. AGAAAGCTGAGCAATTGCCTGCTTTGCCTA 191090 29 100.0 30 ............................. ATCCCATTAAAGAAATCATTTTGGTCTTGG 191150 29 100.0 30 ............................. AGATCAGAGGCACCAAGCAATGCAGACTCC 191210 29 96.6 30 ............................T TTACCCTTGCCATGCTTGCCAGAATTAGAA 191270 29 96.6 30 ............................T ACCACCCATTGAACGTTAGCCATATGAGCA 191330 29 96.6 30 ............................T TCCATGCTTCACATAGAAATTCATTGCAAG 191390 29 96.6 30 ............................T ACTGCTTCCCAAGTCAGTAAAATGATTGTT 191450 29 100.0 30 ............................. CAGTAGTATCATTTCAATCGAGTAACGTTG 191510 29 100.0 30 ............................. AAAAGACCCAAAGAAATTCGCTCGTTTCTT 191570 29 96.6 30 ............................T ACACGGCGATCTTGTTTAATAGTCTGAGTT 191630 29 96.6 30 ............................C AATACAAACATTTGACTGCACATCTGGAAC 191690 29 96.6 30 ............................T AGAAAGCTTGGAAAACAAAGGTGACTGTAA 191750 29 100.0 29 ............................. GAAACATCTGTTATTTTTATTGATGAGGT 191810 29 100.0 30 ............................. CCCTTTGGATTGAAGACTCTGCTTTTGCTG 191870 29 100.0 31 ............................. TTCACCAGCCTCGGCTAGACTTGATGCTCCT 191930 29 100.0 30 ............................. AGCAAAATTCAAAAGAATTACCCCAGCCAA 191990 29 96.6 30 ............................T TGGTGTGCCTGCGCCCACTCAAGCCATGAT 192050 29 96.6 30 ............................T TTAACCGAGATCAAGAAGTAATTGCTTGGG 192110 29 96.6 30 ............................T ACAATACGACGTGATAATGCAACTAAAGCC 192170 29 100.0 30 ............................. CGGTAAAATTAAGTTACCTGCTAAACTTGT 192230 29 100.0 30 ............................. ATCAAAGCCTTAATCGCTAAATCAACTGCT 192290 29 93.1 30 .............C..............T TTTGTTTATACGGTTAATAAATCAGTACAA 192350 29 100.0 31 ............................. TTACACAGGCATGGCAATGAAAGTGTTCTTT 192410 29 96.6 30 ............................C CTCGTGGAAAAACTTAAAAGCCATCTTCGT 192470 29 96.6 30 ............................T TCATCTAAATGTTTTTGACGTTCAGCTTCA 192530 29 96.6 30 ............................T AGACAGCTCATTTAATCCGGGTGAGAAACA 192590 29 96.6 30 ............................T AGATAATGTTGAATGGGTTGAAACTACCTA 192650 29 100.0 29 ............................. GTTCAGCATTCCCCTTCGGGGTCAACGTC 192710 29 100.0 31 ............................. TTACCCCTCCTTACTTTCTGCTTTAACTTCT 192770 29 100.0 30 ............................. AAACACCAAGCCATAAAATTAATTACAGCA 192830 29 96.6 29 ............................T GTTTTGCTAATTTATCAATATCGATTTTC 192890 29 93.1 30 ...AC........................ CAGGGGTCAAGTTCAGAAGATTTACGTTAC 192950 29 82.8 30 ...GC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACG 193010 29 89.7 30 ....C.......G...............T AAATGCTCAACTATTTCTGTAGCTAATGGA 193070 28 82.8 30 ...GC....T...-..............T TCAAATGATTTAATGAGCTTGTAGCCATTT 193129 29 89.7 30 ...GC.......T................ CGTCTTCTAATGATGGACTTTAATCCAATA 193189 29 82.8 31 A..GA.......TC............... TCTCACTGAAGATATGACCATCACTTTCTTC 193249 29 82.8 30 ..CGC.......CC............... AGCCATTTACTTTGATAAAGCGTCACATAG 193309 29 96.6 30 ............................T AGGAAATTCTATCGGCCCAGCATCTACAAA 193369 29 100.0 30 ............................. AGAGACACATCGTTAATAATCTCTTGTGCG 193429 29 100.0 31 ............................. TGAGCAAATTATCAATTGATCTATCTGCAAG 193489 29 89.7 30 ............CC..............T AGACGGTGTTACCTGTAGGCGGTGTCTACT 193549 29 89.7 31 ...TC.......C................ TCGTTTGAATAATATGGACAATCCAGCCAAT 193609 29 86.2 30 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATAT 193669 29 79.3 30 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATT 193729 29 89.7 30 ....G.......C...............T TCATCACGTAGCCTTTTACACGCATCTTGC 193789 29 93.1 49 ....................C.......T GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCT 193868 29 93.1 29 ....G........C............... CCAGTTTGCTGAAAATCACCAATACGGTC 193928 29 79.3 30 ...TC......TCC..............G ATTCTATGAGCGTGACCATGACTCTATTTA 193988 29 89.7 30 ...GC.......C................ TTATCCAGATAAAACCATATCTACAAAGTG 194048 29 93.1 30 ....G.......................G ATCATCTACAGTGATTGAATAAACGGTTTT 194108 29 82.8 30 ...GC......TG...............C AACGACGACGCCGTGTGTTTGTTATCGGAA 194168 29 79.3 31 ...GC....T..TC..............C AAGTAGGATTTGCAGCCCCAATAGTCTTTAT 194228 29 75.9 0 ....G....T...C.A........AT..T | ========== ====== ====== ====== ============================= ================================================= ================== 66 29 94.6 30 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCAAGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGTTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTTATGCCAGTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTTCGAATCTTGGTGGGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTA # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-76] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //