Array 1 950502-952543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXRO010000001.1 Citrobacter sp. RHBSTW-00089 RHBSTW-00089_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 950502 29 100.0 32 ............................. AGGCACGTCTTCGGCAATTTGGCTGATACCCA 950563 29 100.0 32 ............................. GATTTGATAAGCCGCTGATTGACACATCAAAC 950624 29 100.0 32 ............................. GCGCTGGGGGAATTCACCCGCTACGGCAAATC 950685 29 100.0 32 ............................. CCCGCCAAGATAAACCTCAACGAGCAATTCTT 950746 29 100.0 32 ............................. CGGGAACCCACTGGCGTACAACACCAGTTCAG 950807 29 100.0 32 ............................. GTATCAACCACATAGATATGACCATCACGCGG 950868 29 100.0 32 ............................. TACTGAATGACTATGCCGAAACGCTGGAGAAC 950929 29 100.0 32 ............................. TTGGCGATCATTTTCGGTAACAGCGGGGCCGC 950990 29 100.0 32 ............................. CTGTTGCGCTCTGAACTCCGTCAGATTCACAA 951051 29 100.0 32 ............................. TGGCCGCAACCGGAACAGGCGGCGCAGGCGGA 951112 29 100.0 32 ............................. CTGGCCCGATAATTCTCCGCACTGTCGGTGGC 951173 29 100.0 32 ............................. ACCTGGCGCCGGGTTTAAATCTTCCAGTACGC 951234 29 100.0 32 ............................. TACCAACGTGTGCTGGTGGCACGATCTCGTGA 951295 29 100.0 32 ............................. TTGCTTTTGCCATTCTGTTATCGCCCCTTATG 951356 29 100.0 32 ............................. TCATCAGCCTTTACAACTGGTACATGCCCGTG 951417 29 96.6 32 ..........T.................. TGCAGAGGGCGCGGCGCGCGCGCACTTCTCGG 951478 29 100.0 32 ............................. GGTGAGGGTTCTCCAATCGAGTTGGGCCTTGT 951539 29 100.0 32 ............................. TAAACGGCTCGGGCAAAAAATATCAGCAGCAG 951600 29 100.0 32 ............................. GGGCGATAAAGCAAACTTCCGGGACCGTTAGT 951661 29 100.0 32 ............................. CTCTTAATAAACGCGTTTAGCGGATTAGTCTC 951722 29 100.0 32 ............................. TTGAGCGTGCAATTCTGGAGCATGCCGGGCTG 951783 29 100.0 32 ............................. ATGTAGATATGGCCGCAGGTGGTTATATGCAG 951844 29 100.0 32 ............................. AGAACGGCGGCGGGTACTGGCTGGGCCGGATT 951905 29 100.0 32 ............................. CGGTACTTATCTTAGCCCACCGAACGCCGTCA 951966 29 100.0 32 ............................. GAATGGCCAATAATTTTAAATTCAGCCAGCGC 952027 29 100.0 32 ............................. AATTCATTGTCAGTATGTTGCTGTTGATAGTA 952088 29 100.0 32 ............................. AACGCAAACACACCCTTGATGCCGCTGAATTT 952149 29 100.0 32 ............................. AGTTGATGCGGCAAATCGTTGCGGCCGAAATG 952210 29 100.0 32 ............................. ATCACCTCGACTGTTCAAAACTCGATAGTAAA 952271 29 100.0 32 ............................. GCGGTCTCTATGTCGATGCGGTGGACTGAATA 952332 29 100.0 32 ............................. CTGGAAGTCCCGCGTGATGTGATGGATGTTTT 952393 29 96.6 32 ............A................ CCGGAGGTTCTGATGGTGTCCGAAACCATGTC 952454 29 93.1 32 ..T................A......... GAACATCCTGAAGTACACATCAAAAACGAACC 952515 29 86.2 0 ............T............T.TA | ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAACGGCAGGCAGTCCGGCACCAAAAAGTGCTGCCGCTGCTGGCGTCACTGGAGGGGTGGCTGCGGGAGAAACAGAAAACCCTCTCAAGGCACTCAGAACTGGCGAAGGCGTTCGGGTATGCGCTGAACCAGTGGCCGGCGCTGATCCGCTATGCAGAAGATGGCTGGGTGGAGGTGGATAATAACATTGCCGAAAACGCCCTACGACGGGTCAGTCTGGGGAGAAAAAACTGGCTGTTCTTCGGCTCGGATCATGGTGGTGAGCGCGGTGCGTCACTGTACAGTCTTATCGGGACGTGCAAATTAAACGGCGTGGATCCGGAACGCTATCTGCATTATGTACTTGATGTCATCGCCGACTGGCCTGTGAACCGGGTGGGTGCTCTGCTCCCGTGGCGGGTTACTCTGCCTGCCTGACCAGCTTCACTTCGTCAATACGGTTCTCACTGCACGCTTACGGATAAACCGCGTGTTTATCTCCAGCATTTCCCCGGCAGTAA # Right flank : ACTTTGAAAGCAGAAATATTATGGGGCTGGATGGGTTACGAGGATTTTCCCGCCTTTGCCAGTTCTTTCACCAGCGGGAGCATAATGCGTACCACGTCGCGGCTACGGTGCTCTATCCTGCCCGGTAAGGCTTTATCGATATGCTGCTGGTTATCCAGTCGCACATCGTGCCAGCTGTTGCCTGCCGGGAACGAGGCGCTTTTGGCGCGCTGTTGATAGCCATCTTTCTTGCCCAGACTCCAGTTGGTTGCTTCAACGGAGAGCACGGCAATGCCCGCATCGTCGAAGACCTCTGCATCGTTACAACATCCAGTACCTTTCGGATAGTTTTTGTTCAGTCCCGGATTGGTGCTGGCTACGATACCGCGGCTGTGCGCGATGGCCAGCGCCCGGTCGCGCGTCAATTTTCGCACAGCTTCCGGGGTTTTCTTACCGCTATTGAAATAGAGCTTATCGCCGACGATCAGGTTATCGAGGTTGATAACCAGCAGCGTATTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3878151-3876047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXRO010000001.1 Citrobacter sp. RHBSTW-00089 RHBSTW-00089_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3878150 29 100.0 32 ............................. ACGAATCCTTGAGAGCTGGTATGGTCGCAATT 3878089 29 100.0 32 ............................. ATTTTATAGGCACACCCGCCGATAAAATTGCA 3878028 29 100.0 32 ............................. TTCTCGCGCAACGACAAAATGATGGAATTCTC 3877967 29 100.0 32 ............................. CGCACATAGGAATTGCTGTGCCACATCGGCTG 3877906 29 100.0 32 ............................. CGGTCCACGTGGCCGCTTTTCTTTTCAAAACG 3877845 29 100.0 32 ............................. GGTCGTCACCAGCAGGATGTCGTTATCGGCGT 3877784 29 100.0 32 ............................. CGGGAGTATATCTACCGTACCACAGGTAAAGA 3877723 29 100.0 32 ............................. TTGATTGAAATGCTGAAAACTCGCCAATTCCG 3877662 29 100.0 32 ............................. GGCTTTGAGTATCAACCTAACTGCCAGATCAA 3877601 29 100.0 32 ............................. GTCAGCCAGCGTGGTGTCGATGTAGGCATAGC 3877540 29 100.0 32 ............................. CATGCTGGTTACTGCCCAGGTCATCAGCGCCT 3877479 29 100.0 32 ............................. AGCGGAAATTTAGCCTGATAACCATATGCAAA 3877418 29 100.0 32 ............................. CACCGTTACCGGGTCGCCGATTTTCGGCGCGC 3877357 29 100.0 32 ............................. TTTTTGCCGTTCGCCGGCTTCGCTTGCAACAC 3877296 29 100.0 32 ............................. CCTTTAGCATCGCTGATCTTGCGAACACGCCG 3877235 29 100.0 32 ............................. CATCTTGCGGGCTTCCCGTTCCGTTGGCGCGT 3877174 29 100.0 32 ............................. GAGATCTCGACCATTGATATTTCCGTTATTGG 3877113 29 100.0 32 ............................. CCACAATTTTAACCCCACGCAAAACGCCGTGA 3877052 29 100.0 32 ............................. GCCAAAATCACCGGGGAGAATGAGGCGCAACC 3876991 29 100.0 32 ............................. GGCTTTCTCCGCTGCCATTTCTCATGATTACA 3876930 29 100.0 32 ............................. CGCGGCTAACTCACGATCTATACGCTCACCCA 3876869 29 100.0 32 ............................. TAGATCGCATTACGATTAGCGAGCTACATAGA 3876808 29 100.0 32 ............................. GCCACCAGCGGCCCTACGTTCGGCCGCTTCTT 3876747 29 100.0 32 ............................. GTCGTGCAGTACCAGCAACAGATGTTGATCAC 3876686 29 100.0 32 ............................. TCTAAATTTGAGTTTCACCCGGCGACGGGTGG 3876625 29 100.0 32 ............................. CAATGCCGCCTTCTTCCGTGCTCAGGCGGTGC 3876564 29 100.0 32 ............................. GTGGAGAGAGTGATAAGCGCCGTAGATATCGA 3876503 29 100.0 32 ............................. CGGGGACACCGGTGCGGGAGACAGTGAATCAG 3876442 29 100.0 32 ............................. TAGCCCTGCGTTACGTCAGCGCTACGAAACGT 3876381 29 100.0 32 ............................. AAGACGTTTAACTATTTACAGGACTGGATCCG 3876320 29 100.0 33 ............................. CTGATCACTATACCCTTGAATACCACGCTCAAG 3876258 29 100.0 32 ............................. GAATCTACCAGGTTAATGAGCATGGAGATGTC 3876197 29 100.0 32 ............................. ACTTCATCCGGATCCGCGATGAGTACCGGCGA 3876136 29 100.0 32 ............................. CAATCTATTCAGTTTGTGCGTCATACCATCAT 3876075 29 93.1 0 ...........................GT | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATTGATTGAAGAAGTACTGGCTGCCGGGGAAATTGAAATCCCTAAACCTTTTGCAGATGCCCAACCTCCGGCGATCCCTGAGCCTGTTTCATTGGGCGATGCAGGGCACAGGGGGTAGCGCATGAGTATGCTTGTTGTTGTCACCGAAAATGTTCCTGCTCGTTTGCGCGGTCGTCTGGCTGTCTGGTTATTAGAAGTTCGCGCAGGTGTTTACGTTGGCGATACCTCACGTAAGGTGCGAGAAATGATCTGGCATCAGGTCACTACCCTGGCAGACGAAGGGAATGTTGTTATGGCTTGGGCGGTGAATAATGAGTCTGGTTTTGATTTTCAAACATGGGGTGAAAACAGGCGCATGGCGGTGGAACTGGATGGATTAAGGTTAGTGTCATTCCATCCTTCGTAAAATCAATGGGTTATATTTCTTTAATAATGTGGAAAATTTGGTGAAATTTTTCTACGGCTATAATCCCTTTTAGATCAGTGATATAGTTTTAGA # Right flank : AAGCGTCGTCTGAGTACCGTCTGGTCCCGAATCCAGGATCCTGTAACTTAAGCACCCACTTATTTTGCAGGTGGACACCTCATGCGCGCTAAAGAAAGACTTCCCCGGAAACACTATTCCCCTGAATTCAAAATGGAACTGGTCAGGCTGGCTCTTGAAGAAGAAGGCAGTATTGCCGCACTGGCCCGGAAACATGACGTCAATGATAACCTGCTCTTTAAATGGATAAGGCTCTGGCAGCGTGAAGGGCGGGTCTGTCGGCCCCGAAAAAACTCATCGTCGCTTCCTGCCCTGATACCCGTGCAGCTTCAGGCGGGCTCTTCTCTCCCAACCTTCGAACTACCATCCTGCTCTCCTCCCGCTACCTGCCACATAAAATGTCGGGGAGGAGAAATAACACTGACTCATCCCTCTGCTGAACTCATGAGCACTGTCCTGCGCGAACTGATGCGGGGGCCGGTATGATAAATCTTCCCGCAGGCACAAAAATCTGGCTGGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //