Array 1 110377-107844 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROF01000007.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001349 CFSAN001349_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110376 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 110315 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 110254 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 110193 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 110132 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 110071 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 110010 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 109949 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 109888 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 109827 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 109766 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 109705 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 109644 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 109583 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 109522 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 109461 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 109400 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 109339 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 109278 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 109217 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 109156 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 109095 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 109034 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 108973 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 108912 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 108851 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 108790 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 108729 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 108668 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 108607 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 108546 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 108485 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 108424 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 108363 29 93.1 33 ..........................A.C GCAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 108301 29 100.0 31 ............................. TTACCTGGTTCGTCTGGTTCAACTATATCGA C [108286] 108240 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 108179 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 108118 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 108057 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 107996 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 107934 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 107873 29 96.6 0 ............T................ | A [107846] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTAATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128310-127001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROF01000007.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001349 CFSAN001349_contig0006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128309 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 128248 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 128187 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 128126 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 128065 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 128004 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 127943 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 127882 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 127821 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 127760 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 127699 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 127638 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 127577 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 127516 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 127455 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 127394 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 127333 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 127272 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 127211 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 127150 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 127089 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 127028 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //