Array 1 67803-67448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFIF010000004.1 Clostridium cochlearium strain AGROS13 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 67802 30 100.0 36 .............................. AGTTGCATTTTCTGCTTGTTTTCCCCAAATTACTAT 67736 30 100.0 34 .............................. GTTATAATTCTCTTTGAACCATCGTCTAATTCTA 67672 30 100.0 37 .............................. TCAGAAGAATTGCAACAAATACCGTCTGAACGTGGAG 67605 30 100.0 34 .............................. GCTAGTATGTGTGAATATTGTTGGAATGAAACTA 67541 30 96.7 34 ........A..................... ATAAGGTTAATACAACATGTGGTATTAATAATAA 67477 30 70.0 0 ........A......GAT.G.A.AA....A | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 94.5 35 GTTGAACATTAACATAGGATGTATTTAAAT # Left flank : GAGTTGTTGAGTTAAGAAATTGGCTATTAAAAAAAGGATATGCAAGGGAATTAACTGTACAAAGTAATGCTAAAGAAGGGGATTTAGTTCAACTGAGAAATAGTGGTGGATATTGGTATCATAGTTTAGTTATAACTTACAAAAACTCAACTACTGGAGAACTTTTTATATCATGTCATACAGGTGACTATACTAATAGAGCATTATCTACTTATACAACCCATAGGAGATATTTAATATTAACAAGTTAGAAGCCTTGGATGGAGATTATTATATAGTTAGAGAACTATTGATATAAAACTATTAAATTAAATAGTATAAGATTTCCCAAGTGATTTTAATTACAAAAGTGTCATAAGACATTGATTTATAAGGGATTAGATGGTGATTTTAAATGTATTTTTAAAAAAGCTAAATCACCTGGTAAATTTTTAGGGAAATGTTGAATTATCAATAGTTTTATGGTATTCTTAGTTTTAAGGAATGCTGATTTTACAGTG # Right flank : CTTAACCATGTTATAATGATATATACAGAGTAAATAAAATTTATGGTTTTGGAGATGTACTTATAAAAATGGGACAATCATGGAATTGGATATAACTATTTAAAGGGGATGTGATTGTAATTAAGAAGAACAGTAAAATATTTCTAATGATGTCTATACTAATTATGAGCGTATTCATATTTGCATCTTGTGGGAAAGCGAATAAAGAAAGTAGCGTTAAAGAAGTGGATATTTACGATGTAGTAAAGGAAGCATTTTTAACTGATAAGGGGTACTCAAAGGAGCTATCTAAATATATATCAAAAGATGTATTTGAAAGAACCAACATATATAATACTTATAATGTAAGTGATCCAAAGTATAAAAAACCCTTTAAAGTGCAGTTTTACCTAAATGAAGACTCACAAAGTAAGGAAAAAGACATAATTTATGTAAAAATGATTTATACAGTTGAAATAAAGGATTCAGAAAATAAAGTTGTAGGAGCTTCAGGGAATATA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 73677-72347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFIF010000004.1 Clostridium cochlearium strain AGROS13 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 73676 30 100.0 37 .............................. AAATTATAAGAGATACTTTAGATTTATCAAAAGACAA 73609 30 100.0 34 .............................. GTAGATCCATCCATGTGCTTTACTTCTTCTATAG 73545 30 100.0 35 .............................. AAGATAGATGGTGTAATAGAAAAAAACGATAATAA 73480 30 100.0 36 .............................. AATTCTTCTTTATCATTAGTTACTGTATTATTTACA 73414 30 100.0 35 .............................. GCATCATTTGTCCTTGTTATCCACTCTGTGATACC 73349 30 100.0 34 .............................. TTATGGATCCTTCTTTAAGTGATGAAGATAATTT 73285 30 100.0 34 .............................. CAGGATAGTATAAATAATATTAAAAGAGGAATGA 73221 30 100.0 36 .............................. GGTACTAGAAGAGATAAAGTTAAAACTAGAATGAAA 73155 30 100.0 35 .............................. GCATCCTCTTTGCTTATGCTCCATCTTTAGTTACA 73090 30 100.0 35 .............................. GTATCAAGGATCTTACAATGTCTATTTGCTCCTCT 73025 30 100.0 34 .............................. TTGAAAGAGAAGTTAAGGAAAATGGAAACTATCA 72961 30 100.0 36 .............................. TAGACTCAGAAGGGAACAAAATACAAGATTTTCCCT 72895 30 100.0 35 .............................. ATATTAAATAACACTTGTTTATTTATATCGGCTCT 72830 30 100.0 34 .............................. TAGTGCCACATGGTTTGGGTATATTTTACAAGAA 72766 30 100.0 36 .............................. CCTAAAGTTAACACCTTCATATAAACCCCTTTACTA 72700 30 100.0 34 .............................. GGTTTAATTTTATTCTCATATTGAAACAAATCAT 72636 30 100.0 36 .............................. AAACTGTCTAATTCTTCCTCTGTCATTTTATTTTCG 72570 30 100.0 36 .............................. TTACCAACACCCCTACCAACTACTAAAACGTGCTTG 72504 30 100.0 35 .............................. CTACCTTTACTTGCTAACCCTTTATTGACAAGGTC 72439 29 96.7 34 ...........-.................. CCATTTAAAGTTATTAAATATACATACTCTGTGC 72376 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.7 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTAGTTTAAAGGAGAGAATGTAAATGGCTAAAAATTTTAATTATAATTATGCATTTCTTTTTTATGATGTCAATGAAAAAAGAGTAAATAGAGTGTTTAAAACTTGTAAAAAGTATTTGTCACATTTTCAGAAGTCTGTATTTAGGGGAGAGCTTACACCAGCAAATTTTATATTATTAAAAAAGGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTGGGAAATCCACATGGTTTAACAGGAGAAGACTTAATATTATAGATAAAAGTTTTACCAGGTGATTTAACATAGGAATGTACTCTAAAGTATTGAATTATAAGGGTTTATGTCCTGTTTTTAAAATATAGTTTTCCAAAAGATAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATAGCTTTATGCTATCCTTAATTTTAAGGAATGTTGATTTTACAGTG # Right flank : AGCATAATATCTTTGAATTGTAAAGTAAAAAAATACCGTATATTCTATTTGGAATAATACGGTATTTTAATACTATTTTTAAATTGATTTTTCTTATGTTTTAAAGGATCTAACCAACAAACTGATAATTATCACAGAGTTTTACTTTGCTTCATCAATCTTTTGGATGGTATCTTCACGAATAGCTTGTCTTAAAGATTTTAAATAATCGGAGAACGCAACCTTATCATCTGCGTAGGTTAGATTGAGTTCAAATTCTTTGGGAATCCAAGTAGACAAGTCTGACATATTGTGCTGAATCAATGCTTCAAGGCCATCAATGGCTTTATAAATTTGAGATTCAACTGTTTTGCGTTCTGCCATTTCTTCATAAAGTTCTCGCATTTCTACTGCATATTCCTTTGGCAAGGAATCAACCCAGTTATAAAGCAGATTTTCTTCCATCAGCTCGTGGTCTAGGTTCTTTTCAAAAGTAGGAATATCTCCAGTAAAACATTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 83452-82914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFIF010000004.1 Clostridium cochlearium strain AGROS13 scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 83451 30 100.0 35 .............................. TTAGATGTTACTGGTCTTTCTTGTCTTTCTCCTAC 83386 30 100.0 34 .............................. GTTGGTTGCAAATTTAGACTTACAACATAATTAG 83322 30 100.0 34 .............................. AATTGCTCCCATGCTTTATCAGTATCAAGGATCT 83258 30 100.0 35 .............................. CCAAAAATAGTTAAAGAAAATATTGGAAAGTTGGT 83193 30 100.0 36 .............................. TCTATTTTATTAAAGACTAGATCTTTTTTTAATTCC 83127 30 100.0 34 .............................. TAGTAAAGAGTGGTTACTAACTAGGGAGAATATA 83063 30 96.7 37 ...........................G.. TTAATTATTGGATATACTAAAAATGGTAGGAGATATC 82996 29 80.0 22 A.....T.T.......T.-..........A ATAGTCTAAATTGTAATAGTAT T [82982] Deletion [82946] 82944 30 73.3 0 .C.T...C.......GA.....T.A....A | A [82919] ========== ====== ====== ====== ============================== ===================================== ================== 9 30 94.4 34 GTTGAACAATAACATAGGATGTATTTAAAT # Left flank : GATTTACTAAAGCAGCCCATGCATTACTACCATTACCAATAACCAATAATGGAGTTTTTCCTATAAAGTATATGCCTTGCAGAGATTTATATAATGGATTTGGAATACTAACTACTTGTTGTAATGGTCTTACCAATGATTCATGTTGGCATAAATCATTTTTATCTAACATAGTAACACATCCTTTTAAATATAAACTATTTAAATTATTTAATAGATAAAAATTAAAATTTTATCTATTAGTATATTGTATTGATATAACTCAAAAAAGTTGTAATATTTTAACGAATATTAGTGAAGGATACAATATTATAGATAAAAGCTTTACCAGATGATTTAAAATAAAAGTATATTGTAGAACATTGATTTAAAAGGATTTGATTAGCTTTTTTAAAATATTTTTGCAAAAAATTAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATGGCTTTATGCTATCCTTAATTTTAAGGAATGTGGATTTTACAGTG # Right flank : TAATATTATGCAAAAGAAATTTAGATTTTAAATCTAGTTATTAAATTCAATAGTATAAATAGTAATAGTTTTGGTAATGATATATATCACAATAATAAATATAAAAATAATTTAAGTATATTATGATGGAAGTTAAAGGAGAGAGAAATGAAGAAAAAATTAAAATTATCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGGAAGGAGAGGAATTGATGGTATCATTTATATAATTGAATTAACTCTAGTTATTACATTAATTTTAAAAATCTTTCAATTTATAAATTGAAAAATCTACTTTCTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAAGATAAAGCATTATGGTAAAATTTATATTATAATGAAAATATAAGGAGGTGAAGAAGTGAAGGTATATGAGTTGACACTAAAAGTATTTTTACTAAAAGATATTAAAAGTGATGAAAGTTTAGAGAAAATAGCAAATATAATT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //