Array 1 3663465-3661395 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGTK01000001.1 Pragia fontium strain NCTC12285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3663464 28 100.0 33 ............................ CCAAGTTAGAAATAAACGGTTCAGGTGGCTTGA 3663403 28 100.0 32 ............................ AGCAGGTTGCATCATTCAAACTAGCAGGGCGT 3663343 28 100.0 32 ............................ TACGCAACCGCCCGCGCTTTGGGACTACGCGC 3663283 28 100.0 32 ............................ TAACACGCATGGCGTAAACATGATTAACGCAA 3663223 28 100.0 32 ............................ GCTAGAATATTCACCTGATGATATTATTTATA 3663163 28 100.0 32 ............................ ACGCTGCGCTTTCCATTCGCAACTCGGTTAGC 3663103 28 100.0 32 ............................ TTTTTAAGTTCTGGGGCGCGAGCCTTGTAGAC 3663043 28 100.0 32 ............................ GCTTGTGTCGCGTCAACTCTATTGAGTAATAC 3662983 28 100.0 32 ............................ TATGAATCAACACTTGAAGATGATAAAGCGCG 3662923 28 100.0 32 ............................ GTTGCAATCCGTCCACCTTCTCAGAATGTAAT 3662863 28 100.0 32 ............................ TATTGAAGTGAAAAACATTGGTAACGGTAAGT 3662803 28 100.0 32 ............................ AGTCGTGGGGGGAATCATGTTTAAACGTTTAC 3662743 28 100.0 32 ............................ TTTATCTTCCAGATGCTAGACCCGTACCGTGC 3662683 28 100.0 32 ............................ GATGCGTGGACTATCATTGCTGAGAACTATAT 3662623 28 100.0 32 ............................ GACAAAAGACTCAGTTGTTCTTGACGATGAAG 3662563 28 100.0 32 ............................ TCCCAGCTTGAGAGCGCGGCTACTCGCCAGAA 3662503 28 100.0 32 ............................ ATCAAGCACCATTTCGTTGTCTTGACTAATTC 3662443 28 100.0 32 ............................ GCTACGTGCCGCGATGATAGTCTTCCTGATGA 3662383 28 100.0 32 ............................ TAAATTTCATGCCTCGCCTTTGCGGGGCTTTT 3662323 28 100.0 32 ............................ TTAAGAACGTCAACGACCTCTTTACCGTAACC 3662263 28 100.0 32 ............................ TTGGGAAAGCGTAGTAACAGGGCTATACAATA 3662203 28 100.0 32 ............................ AAACAGTGTCTTTAAGCAACGTGTTAACGCGC 3662143 28 100.0 32 ............................ ACGACCGGAACTCTTCCACATTTTCTAACATT 3662083 28 100.0 32 ............................ ATTATGAGGATCGACATAACGAACATGGATTG 3662023 28 100.0 32 ............................ CAACGGAATATTTGCTGACGATTGTTATAAAT 3661963 28 100.0 32 ............................ ATATTGCGACCGGCTATCTTACCGACTGTTTT 3661903 28 100.0 32 ............................ GCACTTAACTCAACGTTCTTAGCATCATCAGC 3661843 28 96.4 32 .........T.................. TAAATGTTCCCAATACTCACCTAAAGGGAAAT 3661783 28 100.0 32 ............................ GACCGCCCCAACTGCCACCTAAATGTTCCCAA 3661723 28 100.0 33 ............................ GAAGCCAACGGCATCGATACAACGAGCCTCAGA 3661662 28 100.0 32 ............................ CACATGGGGCAACAAGTCTTTCTCACTCTCTC 3661602 28 100.0 32 ............................ GACTGAAGTTAAACAATGCGCGTCCTCTGTGA 3661542 28 100.0 32 ............................ TCATCGAAAGCAACCTACCGCCTCGAACCGCT 3661482 28 100.0 32 ............................ CAGCAACAAACGCTTCTGCAATTCGCAAAATA 3661422 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTCACCTACGTGAGCTTTGTGCGTAAACAGGTGAAATCGCCAGAGCGGATTGAGCGCGATATGCAGCAAAAATCGGCATTGTGGGCAGCTAAATCGGGTAAATCGCTGGCAGAATGCTTAATTGAGCTTGAAAAAAGTAAACCGACCGATCTATGTCGCTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAGCGCTCGCCAGATAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCATCCGCAAAGTGCATCGTTGGATGGGGTGTTTGATTGTTATGGCTTGAGTGCTAAAGCGAGTGGTAAGCCAGCATTTGCCACCGTGCCGCACTTTTAAACTCAGGTATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATATTATTTAAATACAATGGGTTGCAATGCGCGGTTTTTAACAAGGTAAAAGTGCGATTTTTATCCTAACTGCTTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : GGTATGAAATCAAACTATTCATCATCTACGCAGCATTGCGACAATATGTATCGTTTACAGTTAATCTCGAGAGTATTGGCGGCAAAGAGCCGCCATGCATCAACAATAATTGTTAGGAAGGGAATGTTAAGAAAGGTATTTGTAGTTTGAATCGTCCCCGTACCTCATATCGTACCCATCCCAATTTCTTCTACTTTAAATTATCGGTGATAAGCCTTATTTAATGCGCTCTAGAAGTACACCCGATTCCATATGATGGGTATAAGGGAATTGGTCAAATAACGCCAGTCGACTCACCCGATGAGTTTGGTTGAGGACAGTCAGATTTTCACATAGGGTTTCCGGATTACAGGAAATATAAAGAATTCTTGGGTAATCCTGAACCATGGTGACCGTTTGCGGATCGAGGCCGCTACGCGGCGGATCGACAAAAATGGTTTCGCACTGGTAGCTGGTTAAATCAATGCCTTTTAGTCGATTAAATTCCCTGACACCTTGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //