Array 1 37351-39436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMWW010000008.1 Collinsella aerofaciens strain BSD2780120875b_170604_F5 NODE_8_length_93323_cov_63.87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 37351 36 80.6 30 TA......T..........T.....GT..G...... ATAAGAGTGGGAAAGTCCATATTTATGCTT 37417 35 77.8 30 A..G.......-......A...CA...T.G...... CTGTGTGCGTGGATGCGAACAAAGTTTTGC T [37425] 37483 36 94.4 30 .................G..........C....... AATATCCATCCTGAGAATGATGCAAAGTAG 37549 36 86.1 31 ............TC...............G.A...T TTTATGGACTCTTGGGTTTTTTGCCGGCCAG 37616 36 80.6 30 A............C.....T..A..C...G.....T AGGCCTTATGTAGGCAGAATTAAGCGCGAA 37682 36 88.9 30 ....G..................A.....GT..... GTAAATCATTGCGCCATATGGCGGCTCTGT 37748 36 80.6 30 ..C...A.A..AG............C...G...... CATCCTACGGTGGGAACGTCGCAGCCGGAT 37814 36 97.2 31 ....................A............... AACATGTTGCAGCCGCCAATCGCTTGAAGAC 37881 36 94.4 30 .......G..A......................... ACGCACCACGTCCGCAGCCTTGACGTCACA 37947 36 94.4 30 ..........A........T................ AGAATACGACACGCGCCCCATAAACTCATG 38013 36 97.2 30 ..........A......................... GTCTTGAAGACACCTTTGGTCGCATCCAAA 38079 36 100.0 30 .................................... GCTCCTTGGCGGCATACGCAGAACCAACCT 38145 36 97.2 30 ..........A......................... ACAAAAACCTGTACCTTTTTGTGCAACAAA 38211 36 100.0 30 .................................... AGCTATAGCTGATGGGGAGGGAGCGACAGA 38277 36 100.0 30 .................................... ATCACTGGACGCGACGTCGACCTAGCCGAA 38343 36 100.0 30 .................................... GTGTATGTGTTACGGGGCGGGAGCTGCTCC 38409 36 100.0 30 .................................... CGGCAAGCGAGTGAAACGAGCGCGCAGCGG 38475 36 100.0 30 .................................... AAGAGCCCGCGTTTGTCCTCAGACATGCCA 38541 36 100.0 30 .................................... ACATACGTCCTGCAATGCCATAGGCATTCC 38607 36 100.0 30 .................................... CGTGAAACCGTTGGCGATTATGTAGCCGAC 38673 36 100.0 30 .................................... CTCTTCCTTGGCCATAAAAATGGAGCCCTT 38739 36 100.0 30 .................................... ACATACGTCCTGCAATGCCATAGGCATTCC 38805 36 100.0 30 .................................... GTATCGAAGGTCATGCCAGAGGTCTGCTCG 38871 36 100.0 30 .................................... GCCGCCGGCAAATGCCACCACGCAAAGGCG 38937 36 100.0 30 .................................... TCTATTCTTCAGACACCGCCCGCCGCGCCC 39003 36 100.0 30 .................................... CCATAATAGATGCGAGTCATGGCCAATTCA 39069 36 91.7 31 ........A..A.................G...... AGGAACCCCCCCCCATCACAGTTTCCTCGGT 39136 36 91.7 30 ........A..A.................G...... TTTTTCTTTTGAACTCACATGGACATACCT 39202 36 91.7 30 ........A..A.................G...... TGGTCGGCATGGCAATCTCCGTTCGACGAC 39268 36 91.7 30 ........A..A.................G...... ATCGGCTTCACCAGACCGTCGGCGGCGTCG 39334 36 91.7 31 ........A..A.................G...... CGCTTTGCATGATTGATTTCAAATATTCGAA 39401 36 91.7 0 ........A..A.................G...... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 94.4 30 GGTAAGTAGCTGCTCGAAGCGCGGTACCTACGAAGC # Left flank : GTATCCCCGGGCTGTGCTTGGAGCATGGTCTTGTCTTCATGCTCCAGTGCAGCGTAGCGCCAGCGTTGGTAAAGATGGGAGGCGCACCAAAAGCCGCAACCGACGGCTAATGTGGTCGCCAATCTGACGCCAAAAGACACGGGAGCCTCCTCGATATAGGCATAGGTACTCATATTTAATTTTGTAGTCGTGTTTGCTCAAAATAAGGCTAATTTGGTGCCAAGCGGTGACACTATTTTGATTGAAACGCCTATCCATTCGACCTGGGGTTGTGGCAATGGATGACCTACGAAACCGAAGTGGTCGCGAAGAAGTTGCCACGAGAGCCGTATCGGATTGCGCGAAAGACGGCAATCAACCAGGGCGAAGCTGTGAATCGCAGCGATCTAAGAACCTTCGAAGCCATTAGGTGTGTCGGCTAATTCCCGCGCCTGTAAAGCAATTGCCCGAAATACGATACCTGCAAAACATGTACGCCCATGGCTTTGACTGCCTTGTGA # Right flank : CCGAAGAATTGACATCGACTGGCAAGTCCGTATAAGAGCAGCTACTGAAGCTAAAAAGTTGATTAGAAGAAAGAAAAGGTTCCGACGATTTTGGGAAACCATCCTATTTCCGCCCGGAAACAGGATGGTTGTGTGAGTTCTGGAAAAACCTGACAGCTACCGGATCATCGGAAAACCGTGCTATCAAGCAATAAGCCTTATTTGAGATTTCAAGGTGCACGCACCAGTTTAACGGTTTAGACGTTACGGGAGAAGAGGACCCGATCTCTATCTATATGCCACACTGGGATCTCGAGATTGGCAGTGTCTACCTCCCGGTATTCGAGAAACAACATTTCCAGGCCCTCATGGCGCGCCTTTCGAGTTAATTCCAAGACCTCGGTCGGATTTAGCTTGTCGATGAGGGCGATTACAGCAATTGACGGATTCAGCCTCGTATCGCAAACGTAATCCATGAAGGAGAAGAATTTTCTTTGCAGGGTATTGGCCGGCTCGCGGCG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAAGTAGCTGCTCGAAGCGCGGTACCTACGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [47-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //