Array 1 247478-248847 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATK01000032.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_d7 d7_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 247478 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 247539 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 247600 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 247661 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 247722 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 247783 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 247844 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 247905 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 247966 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 248027 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 248088 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 248149 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 248210 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 248271 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 248332 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 248393 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 248454 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 248515 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 248576 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 248637 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 248698 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 248759 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 248820 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 265107-265808 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATK01000032.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_d7 d7_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 265107 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 265169 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 265230 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 265291 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 265352 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 265413 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 265474 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 265535 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 265596 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 265657 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 265718 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 265779 29 96.6 0 ............T................ | A [265806] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //