Array 1 1-404 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRU01000117.1 Streptobacillus moniliformis strain NCTC_10773 contig_118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 36 100.0 30 .................................... TGATTTTAGAATTTTCAGAACTTAAAATGA 67 36 100.0 30 .................................... GGCACCTATTATAACTATGTGATAAATCCG 133 36 91.7 0 ....AG....A......................... - Deletion [169] 169 36 100.0 31 .................................... ATGTTGAAAGAGAATGTTATGTAAAGTGTAA 236 36 97.2 31 .........G.......................... AATGAAAAATATAAGGACAATGCAAAATTAA 303 36 100.0 30 .................................... AATCGCTTTAAATAAACAAATTATATGACA 369 36 91.7 0 ..........T.........C..C............ | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 97.2 26 GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Left flank : | # Right flank : A # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 13136-9203 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRU01000017.1 Streptobacillus moniliformis strain NCTC_10773 contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 13135 36 100.0 30 .................................... ATGGTGGAGGTGAATATTTTGAATTTGTAA 13069 36 100.0 30 .................................... AAGGACAGATATGGATATTATAGAAATAAA 13003 36 100.0 30 .................................... CGGAAACTTACAAAAAAAGAATGTATGGGA 12937 36 100.0 30 .................................... AATTTCGACTATTTTAACAGCTCGAGAGTA 12871 36 100.0 29 .................................... GAATATTCTAAACAATAGAATGATAAGAA 12806 36 100.0 30 .................................... TATTAGAGTCGTTATTCATATATTGATAGA 12740 36 100.0 30 .................................... TATTATTAATTGTCCAGATATATTTATCAA 12674 36 100.0 30 .................................... ACTTTTATAAGCATTTATCATCTTAGACCA 12608 36 100.0 30 .................................... TGATTTTAGAATTTTCAGAACTTAAAATGG 12542 36 100.0 30 .................................... GGCACCCTTTATAACTCAGTCGCAAGGTAT 12476 36 100.0 30 .................................... TGTCGTAACAAAAAAAGAAACGAGTGGACC 12410 36 100.0 30 .................................... GTGTTTAGGTGTTACATTTAATGCTTTAGC 12344 36 100.0 30 .................................... TGAACTGCAAATTTTCGGAATAGAAAACAA 12278 36 100.0 30 .................................... AAAAATGGAAGGGAAAACAATAAAAGTTAA 12212 36 100.0 30 .................................... ATTACACATATAGTTCTAGAAAAGAAAAAA 12146 36 100.0 30 .................................... TACTGACAACTTTTTATGAGGGGGACAGTG 12080 36 100.0 30 .................................... AAAAAGGAGTTTAAAAAATGGAACTAATTA 12014 36 100.0 30 .................................... AATTAAAAAAGATGAATTAATAGAAATTTT 11948 36 100.0 30 .................................... TCAAAAAGTTTAAATTGGGATACTGAGGAA 11882 36 100.0 30 .................................... GAAAGGAGTTAAATTCCGAGTTAAATAATA 11816 36 100.0 30 .................................... TTCAGTTTCGTTATCTTCTTTTACCGTTAG 11750 36 100.0 29 .................................... TTAAAAATAATAGTTAAAACCTACTTTTA 11685 36 100.0 30 .................................... TCTTTCTGTCATTTAAATTTGGTATTGTTG 11619 36 100.0 30 .................................... TACTGACAACTTTTTATGAAGGGGACACTG 11553 36 100.0 30 .................................... ATTTTATATAAAAAGTGTAAAAAAAGTAGA 11487 36 100.0 30 .................................... GGCACCCTTTATAACTCAGTCACAAGGCAT 11421 36 100.0 30 .................................... ATCTTTATTTTTTGACTTGGTATAATTTCC 11355 36 100.0 30 .................................... AAAACCACTTACGATACTTTGTAGTGAATA 11289 36 100.0 30 .................................... ATTCAATCCAGCTTTTAGAAAATTCATAAT 11223 36 100.0 30 .................................... ATTCATTGGTATCATTTTTACATTTAATAC 11157 36 100.0 29 .................................... AAATCTTTATCTTTAGTACTTCCGATATA 11092 36 100.0 30 .................................... TAAACGAAAAAGATATCACAAAAGAAGAGT 11026 36 100.0 30 .................................... GACTACTACAATTAATCATCAATCAAATTG 10960 36 100.0 30 .................................... CAGAAACTTATAAGAAAAGAATGTACGGAA 10894 36 100.0 30 .................................... AAAATAAAGTTAATGAAATCAACGAAACTA 10828 36 100.0 30 .................................... TCTTTCTTCATTCTCATTAATTGCTCTTAT 10762 36 100.0 30 .................................... AAACAAAATTTGATTATGCAACGCCGGAAT 10696 36 100.0 30 .................................... TTGAAAATTATAAAATGAAAAATTTAGAAA 10630 36 100.0 30 .................................... AAGAAATGTACAACAGTGGGGAGCTGCTAA 10564 36 100.0 30 .................................... CAGCACAACCGGGTATTATAATGCCGATGC 10498 36 100.0 30 .................................... AAGAACTACAAAATTTTGAAGATGAAGAAA 10432 36 100.0 30 .................................... TTTCAACAATGTGAAGACAATAACGAATTA 10366 36 100.0 30 .................................... AACGCAAGGGTTTAGGACAGTATTAGAACA 10300 36 100.0 30 .................................... CAGAAACTTATAAAAAAAGAATGTATGGAA 10234 36 100.0 30 .................................... AATATCTCTTGGGTTGGGATACAATAAAAG 10168 36 100.0 29 .................................... GTAAATTTAACGACAAAATCCGAATTTGA 10103 36 100.0 30 .................................... TTTCAACAATGTGAAGACAATAACGAATTA 10037 36 100.0 30 .................................... ATTATAAAATTATAGAAGATATCAACAAAT 9971 36 100.0 30 .................................... TTTAAAAGAGAATTAAAAGAAGAAATTGAA 9905 36 100.0 39 .................................... AACGCAAGGCCAAACGAAATGCTTTTTTAGTATGAAAAG 9830 36 100.0 30 .................................... AACGCAAGGGTTTAGGACAGTATTAGAACA 9764 36 100.0 30 .................................... CAGAAACTTATAAAAAAAGAATGTATGGAA 9698 36 100.0 30 .................................... GCTAAATGGAGAAGTATTATAAAGAACAAA 9632 36 100.0 30 .................................... ATACAACACCAGTAACACAAACGGCGCCGA 9566 36 100.0 29 .................................... TTTAATACGGCTAGAATAATGCAACTCAG 9501 36 100.0 30 .................................... TTCCTCTAATGGCCTATAATTTAATCTTCA 9435 36 100.0 30 .................................... CATTAATTTTATTTTCGTTGTTTGTTATTT 9369 36 100.0 30 .................................... GTATATCAAATGACAATGAACGGAACTATG 9303 36 100.0 29 .................................... TTTTTAAAAAAAAAGGCTTAAAAATCTGA 9238 36 77.8 0 .............AC.......A...G..T.TTG.. | ========== ====== ====== ====== ==================================== ======================================= ================== 60 36 99.6 30 GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Left flank : AAAAGTTATCTAAACTTTTTAGAAGAAGGTAATGAAATGCTGGCTATACCTGAAATAATAAAAATAGATTTTTATGACCTTTTTAAAGAGTTATAGAGAAATGAGATTACTTGTTTACTTTGATTTGCCAGTATCAACTAAATTAGAAAGAAAACAAGCTCAGGATTTTAGAAAAAATTTGTTATCTGAAGGATTTATTATGATGCAATTTTCTTGCTATTCAAGATTTTGCAGAAATGATGCTGAATCTTCAAAATATTTTAATAGAGTAAAAAAATTGAGTAATAAATTAAGTGGTGGAGAAGTAAGAATTTTAAAAATTACTAACAAACAATATGAAAATATGTTAATATTAGTAAAAGAACCTAAATTATCTGAAATAAAGCTTTCAAAAAATCCATTGGTTATTTTTTAGTGTGAATTTTGTGCTAATGGATTGATTATTTAAATTTCAAACTGTATTTTCTAGCAATAAAATTATATTAATTTCATTGCTAGAG # Right flank : TTGACTTTTTTAAATATTATGCTATAATAATTGTGTAGATAAGATTCACATTATTCAAGTTTACTACAGATTCTGTATTAAGATACAAAATCGTAAGACTGGCTGCCTTAAGCAGCTTTTTTTATTTTAAATAATTCTTAATTATGTCAAATTCTTTTTCTTTTCGGATTTTCTCTATTTTATTTTCTATTTCTTTTTCTGAATAAAGGTATACTTCATCAATAAAATTAATATATCTAGGTAACTCAACTAGTTTGTTATTATCAATAAATAATACTTTGTGTCCACTAGAAACTAATTCATATACTATATCTTCATTTTTCACAAAAAATATACATTTTGTATTGAAATCCTTTATTTTAGATAATATATATGATACTTTTTCAAAAAATTTATTCTTAGTATAAATACTATCAAAATCATCAATCAATAATACAGTGTTATCATTTACACTAATTAATCTATTTAAATATATTTCAAGTTGTATATTTACTTTTTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATACAGATTCTTGGTAAATTTGAATAATGTGAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //