Array 1 192123-191760 **** Predicted by CRISPRDetect 2.4 *** >NC_017846.2 Aggregatibacter actinomycetemcomitans D7S-1, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 192122 32 100.0 35 ................................ ATACTGTGGGCTATTATCCACAATCAGTTTTAATG 192055 32 100.0 33 ................................ ATCTATGCTCAATCACCAAGACCTGTAAAAACT 191990 32 100.0 34 ................................ CACACTAATCCATGCGGATGATTTTTTTAACTAT 191924 32 100.0 34 ................................ CGAAGACGCAGTGGAATCTCGTCGTTTTGAGCGT 191858 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 191791 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ =================================== ================== 6 32 97.4 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 274752-283929 **** Predicted by CRISPRDetect 2.4 *** >NC_017846.2 Aggregatibacter actinomycetemcomitans D7S-1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 274752 28 100.0 32 ............................ AAATAACAGCAAGTTCATTTTTAATTCCTCTA 274812 28 100.0 32 ............................ AACTTTTGCCGTAATTTGCTCTAATATAGTTA 274872 28 100.0 32 ............................ TTCTATGTGTATTTTATGCAGTTTAATTAGCT 274932 28 100.0 32 ............................ TTGAATTGTTAAATTTCTGTTAAAAATGCAAA 274992 28 100.0 32 ............................ ACAACAGCAGCGGGTACCTGAAAAATTTTTGA 275052 28 100.0 33 ............................ AGAATCACTTTTAGCTTGTAACAAACTACCAGT 275113 28 100.0 32 ............................ ATCAGGTAAATCTTCAAATTCAACTGTTTGTG 275173 28 100.0 32 ............................ TGATTTATTAACGGTTATCAATGAGTTTTCTT 275233 28 100.0 32 ............................ GGCGCTCGCTTAGATGTTGATCTTGTGACAAC 275293 28 100.0 32 ............................ TTTTTTTGTTAAAAAATATCATTAAAGTTACT 275353 28 100.0 32 ............................ TCCGGGATAAGCGCCCCGCGGGCGTCTTCGCG 275413 28 100.0 32 ............................ ATAATTGTCGATACCCTTCATCTAATGAACTA 275473 28 100.0 32 ............................ ATTACCTGTTTCAACAATTAATTTAGCCATTT 275533 28 100.0 32 ............................ ATGAAATAAGTCGACAAATTTTTCACCATTTG 275593 28 100.0 32 ............................ TAAAGCAGATGTACGAAAGATTCGTTTTATTT 275653 28 100.0 32 ............................ AGTATACAACCCGTTTTGATCTAATTCCCTTG 275713 28 100.0 32 ............................ ACAAGCTTTATATTTGCATTTGCAAACTATTG 275773 28 100.0 32 ............................ TGTATACAGCCCTTTTTGATCTAATTCCTTTG 275833 28 100.0 32 ............................ ATCTTTGTCTAAAAGGATTTATGATACACTGT 275893 28 100.0 32 ............................ TGATTATGATGGATTGATTTCGCGAACAATTC 275953 28 100.0 32 ............................ AAAAAAATTAGAGTGGGATTCCTCACGAGGTA 276013 28 100.0 32 ............................ TGTGCTATATTTTCAGCCTGTGAAGTGCGGTC 276073 28 100.0 32 ............................ ATTATGGGTAAAACCGCAAAATTCCTCGATGC 276133 28 100.0 32 ............................ AAGGACATAATGCGATCTCTTTGCCAGTTGAT 276193 28 100.0 32 ............................ AATCAAAAATCGCCGCCTTGCCTGATGTTAAA 276253 28 100.0 32 ............................ ATTTTGTAAAGCGCTCAATAATGCGAGAAATC 276313 28 100.0 32 ............................ TTCATCGCCAGCCTGTAGTGGGAACGTCACTG 276373 28 100.0 32 ............................ TATTGAACATGAAATTAAAATATGTATTGTCC 276433 28 100.0 32 ............................ CTTTTGAGCACCTTTACTCATTGGCCTTTATT 276493 28 100.0 32 ............................ TACTCAAGCACCGGTTCAACAAGCAGTAGGTA 276553 28 100.0 32 ............................ AATTGCAAATCAAAACATTCTCTTGTAGCTTT 276613 28 100.0 33 ............................ CTGAAACAAGTTCTCCCAAGCCAACAAAACTAT 276674 28 100.0 32 ............................ TTAGTGACACTTGCTTGTTTTCTTGGATTTAA 276734 28 100.0 32 ............................ TCAAAAATTTTTCAGGTACCCGCTGCGATTGT 276794 28 100.0 32 ............................ TGTGGATAACTTTTCAACGTCTTCGATCGAGA 276854 28 100.0 32 ............................ AATGGCACAATTATATCCTGACAGAGTTAGTG 276914 28 100.0 32 ............................ TGCCGCAATTGTGGGCATACATTATCGCAAAC 276974 28 100.0 32 ............................ GTCATCAGGCCAAGTCAAAGTAGGGCGTTAAG 277034 28 100.0 32 ............................ TGATATGGGTTTCATTATTAACACAATTTTAT 277094 28 100.0 32 ............................ CTAATAGCTTCATAGTTGCGTTTTTTTAATGT 277154 28 100.0 32 ............................ TCTGATAAGTTTCTGTCGATTCTCGCCAATGT 277214 28 100.0 32 ............................ AATATCAAAAAATCGGCAATTTTGAAATCCGC 277274 28 100.0 32 ............................ GCAGTACGCAGCCTTATTTTTTCTTCCTTGAA 277334 28 100.0 32 ............................ ATCTTGCGCCTGCGAAACCGCCACAGATTGGA 277394 28 100.0 32 ............................ TAGAGTTCTTGTATTGGAATCAATAAGCTGCT 277454 28 100.0 32 ............................ TGCTGCAATTGTGGGCATACATTATCGCAAAC 277514 28 100.0 32 ............................ TGTTGAAATACCTTTTGATGGTGCGATTAAAC 277574 28 100.0 32 ............................ AACAAAACCCGCTATAGAATATGATGTAGCGA 277634 28 100.0 32 ............................ TACTCAAGCACCGGTTCAACAGAATTTTGTTC 277694 28 100.0 32 ............................ TACTAATTCCAGACGTTCAATCAGCATTAATA 277754 28 100.0 32 ............................ ATGTAAATCAATATGAAATGTTCAAAGCTATT 277814 28 100.0 31 ............................ TATACAACAAATCAGGTAAAGGTAACATTTA 277873 28 100.0 32 ............................ ATGTAAATCAATATGAAATGTTCAAAGCTATT 277933 28 100.0 32 ............................ TATACAACAAATCAGGTAAAGGTAACATTCTA 277993 28 100.0 32 ............................ TTATGAAGAAGCAATGACAGCTGTAATTATTT 278053 28 100.0 32 ............................ TGTGGATAACTTTTCAACATCTTCGATCGAGA 278113 28 100.0 32 ............................ AACCATTGATGACGGCGATCAGATGTTGGTTG 278173 28 100.0 32 ............................ ATCGGTCATATTGATTTAGTAAAAGATATGCC 278233 28 100.0 32 ............................ CGCTGCAATTGTGGGCATACATTATCGCAAAC 278293 28 100.0 32 ............................ AAATTACAGCTAATTCATTTTTATGTACTTTT 278353 28 100.0 32 ............................ ATGTAGGCATTTGTTTTGATTTCTGTAATTTT 278413 28 100.0 32 ............................ ACGACTTGTTATAGCTTTAGTAGGCATAGGAA 278473 28 100.0 32 ............................ AATGGCACATAGTTTTGTTGGCTTGGGAGAAC 278533 28 100.0 32 ............................ GTCCATTTTATTTTCCTATTTTTTTAAAAGAA 278593 28 100.0 32 ............................ TATTTGTAATTCACCGATATTTTCAATTAACT 278653 28 100.0 32 ............................ TTAAAAAATATGCTGACAGATAGTTTTGAGGT 278713 28 100.0 32 ............................ CACGATTCCATAATTGGCGGTAGCCTTCATCT 278773 28 100.0 32 ............................ TTCGTCATAGTCTTTCTTAGTAATAGCATGCT 278833 28 100.0 32 ............................ TTGACGTTGCACTAATTGAGATGGCATGGAAA 278893 28 100.0 32 ............................ ATTAAGAATGGTTATATTTTGGTACAAAAAGA 278953 28 100.0 32 ............................ AAGAAGAAAGTATCAATGCTTTACTTTCATAT 279013 28 100.0 32 ............................ AAAAAATATACTACTTGTTAGTATAATAAATA 279073 28 100.0 32 ............................ ATTAAGACGGGAAAAATATTTACAAAAATTAT 279133 28 100.0 32 ............................ CCAAACTTATTTTTTAATTTGTTAATTCGATT 279193 28 100.0 32 ............................ TCTTTGTTTAAATCTTTGATTGATAAAATAAT 279253 28 100.0 32 ............................ ATATGCACAAACAGTTGAATTTGAAGACTTGC 279313 28 100.0 32 ............................ AAATAATTAAATGGGTTAGGGAATTAATAAAT 279373 28 100.0 32 ............................ TAGAAGACCGCCATTTAACGAAAATCACATGA 279433 28 100.0 32 ............................ AGAGCACAGAGAAGTTATTTTAAAACAAGCTA 279493 28 100.0 32 ............................ TTGAGCCCATGCCGGTGGTGCAACATTTTGAC 279553 28 100.0 32 ............................ TTGAGCCCATGCCGGTGGTGCAACATTTTGAC 279613 28 100.0 32 ............................ AACAAACTGCACTGATAAGCAATTATTGGTTG 279673 28 100.0 32 ............................ TAAAGCAGATGTACGAAAGATTCGTTTTATTT 279733 28 100.0 32 ............................ ACCAATAAAAATTATCTTTTCCCGTAATATAA 279793 28 100.0 32 ............................ ATGAATTTTGACAATTTAGAAATGATAAGAAA 279853 28 100.0 32 ............................ ACAATTTTGACTCGAATTTTTCTATTTTTGTG 279913 28 100.0 32 ............................ ATTAATGGCGGGATTTTTTTTGTCTGAACAAA 279973 28 100.0 32 ............................ TCTCAAATAGCCAATATTTACACTACTAAAAG 280033 28 100.0 32 ............................ ACGAATGAAGCGACTATTTAATCGTGGGCATT 280093 28 100.0 32 ............................ ATTTTGATCGTACTGTTTTACAAAATTACAGT 280153 28 100.0 32 ............................ ATTGAATTAAATAACGTGCTGTTTCTACACCA 280213 28 100.0 32 ............................ TATTCGGCAGTGAAGCAGAAGACAGTCAATGT 280273 28 100.0 32 ............................ TATTCGGCAGTGAAGTTTACTATCTTGCAAAA 280333 28 100.0 33 ............................ ATTTTTCCCAATTGCCATGAAATAAGTCTACAA 280394 28 100.0 32 ............................ AAATGAAAATAGAAGTCATTTAGGAGCAAGCC 280454 28 100.0 32 ............................ ACGAGCCATAGCTTCTTTACCAATTCCTGTTA 280514 28 100.0 32 ............................ AATTCCTGTTAGACCCAACAAAACAAAGTAAT 280574 28 100.0 32 ............................ ATTATTAATGAACTATTAAAAGTAAATCCAAA 280634 28 100.0 32 ............................ TTCTTCAACAAGACTATCGCTTAAAGAATCGT 280694 28 100.0 32 ............................ AACAAAATTATGTGCCATTGGTTGTTGCGTTG 280754 28 100.0 32 ............................ TTTTAGATTGAAATAGTGTTGCAATATTACTT 280814 28 100.0 32 ............................ TTTCCCGAGGTGCTTTTTCTTTTTCAGTTTCC 280874 28 100.0 32 ............................ AGATTCTGTCACACATTGGCAGCCTGTTCCAG 280934 28 100.0 32 ............................ GCACGTAATCGTTACGGTTGCTCAACAAAATT 280994 28 100.0 32 ............................ ACGATATTTAAACGTGAGATAAGCCCTTCTTC 281054 28 100.0 32 ............................ TAGCTTGTTTTAAAATAACTTCTCTGCGCTCT 281114 28 100.0 32 ............................ ATCGGAAGTAGTGTTAAATTTAATGGCTTACT 281174 28 100.0 33 ............................ AATGCCTAATTTAGATAGGGGCTAGGGTTTAAT 281235 28 100.0 32 ............................ AAGACCGGTAAAAACTATTGCAAAACTTGCTG 281295 28 100.0 32 ............................ CAAAGCAGATGAACGAAAAATTCGTTTTATTT 281355 28 100.0 33 ............................ CATAGGCAAAAATTAAGACCTAGGGGTGGGGGT 281416 28 100.0 32 ............................ TTCATCTAATGAGCTATTCATTTTATCGTCAC 281476 28 100.0 32 ............................ ATTATCAGTTTTTACAAATTTCCAACCTATCC 281536 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGGCAGAAATTTTAA 281596 28 100.0 56 ............................ GAGTTAGTGAAATTAATGAACCGGTCCCTGATCTTCACTGCCGAATTGTCCTTTAA 281680 28 100.0 32 ............................ TTTTTAAAAATCTCTGTAACAAAATCATATAT 281740 28 100.0 32 ............................ TTTACCTGATTTGTTGTATAAATCTAGTAAAA 281800 28 100.0 32 ............................ AACTTTTATTTATTTCGATGTCATTTTTCATC 281860 28 100.0 32 ............................ AAGCTTCCAAAATTTTTGAAGTAGCGGCTGCT 281920 28 100.0 32 ............................ TGTAATATAAACATTTGTAAAAAATCCATTTT 281980 28 100.0 32 ............................ ACTAAAAGCTTAAAATAAATTAAGCTACCACC 282040 28 100.0 32 ............................ AAGAACATTAAAGAAGTGTCTGCTCCTGCTTT 282100 28 100.0 32 ............................ TACAATTAAAACTCCAATTTTGTGCCCTTTTA 282160 28 100.0 32 ............................ TGAATATTTAATAAAACAATTATTAATCTTAT 282220 28 100.0 32 ............................ TAACAAATCCTTTCGGCGTTTGATGAGTAAGT 282280 28 100.0 32 ............................ ATCGTCTAAAGAACTGTTAATATTGTTATCAC 282340 28 100.0 32 ............................ TACGGCTAATCCATTCCCGACAGCACAACCGG 282400 28 100.0 32 ............................ AAGATGATAACATTTTGAACTTTTCTGTTCAT 282460 28 100.0 32 ............................ ATGGAAAGGCGCGATGATTTGGTGCAATCCTC 282520 28 100.0 32 ............................ TGTTCAATGGCGTATTAGTTCTTGTAAGGGTC 282580 28 100.0 32 ............................ AGTATATAACCCATTTTCGTCTAATTCTCTCG 282640 28 100.0 32 ............................ ATTCAAAATTCGCTTTGCTTGTGATATATCTT 282700 28 100.0 32 ............................ TTTTCCAGATGGTGAAAATTCAGCATAAGTAT 282760 28 100.0 32 ............................ TAGCATACCATAATACAAAAACTAATCATGGA 282820 28 100.0 32 ............................ TTTAATAAAAGATTCAATAACTGATCTAGGTA 282880 28 100.0 32 ............................ TAACATTTCATACAGATTCAAGAAACGTTGTT 282940 28 100.0 32 ............................ TTTAAATTTAAAAAATCTATAATTGCTCAAAT 283000 28 100.0 32 ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 283060 28 100.0 32 ............................ TCTGAAATAGCTAATATTTCCACCAATAAAAG 283120 28 100.0 32 ............................ AAAAGCGATCGCATGCTCCGCAACTGCAAAAA 283180 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 283240 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 283301 28 100.0 32 ............................ ATTGATCAACAATATTTTTCAATGTTTGATAT 283361 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 283421 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 283482 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 283542 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 283602 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 283662 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 283722 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 283782 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 283842 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 283902 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================================== ================== 153 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTGCACAAGCCTGCCGAGAATGAGACATCGGCGAAACGGTATTGCGTCGCCGGATAAACCAGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAAGCTACCGCGATTTATCCCTCGAGAAGCAAAGTACCAAGCCATCACGACGTTAAAATCGCGCGGAATCAAACGACTTTGTGCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCCAATGTAAAGCGGTAAAAACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2005956-2006452 **** Predicted by CRISPRDetect 2.4 *** >NC_017846.2 Aggregatibacter actinomycetemcomitans D7S-1, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2005956 33 100.0 34 ................................. AATACATGATTTTGATTTAATTGTAAACCTTGTG 2006023 33 100.0 32 ................................. ACTTTTTTAGATAATACATATACAAAAAATTT 2006088 33 100.0 32 ................................. GATACATTAATTATTATTAATCGATATAATTT 2006153 33 100.0 34 ................................. TCGTGAAAATTACGCGCTTGTTTATATATTCGAC 2006220 33 97.0 35 ................................T ATCAAGGCAATGGGGTTGTTGACAGCAGCTACTAA 2006288 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 2006354 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 2006420 33 81.8 0 .......T.....CA.....C...T......T. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 97.0 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //