Array 1 95-943 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWXD01000042.1 Mycobacterium tuberculosis variant caprae strain ATCC BAA-824 M_tuberculosis_caprae_ATCCBAA-824_Contig57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 95 36 100.0 38 .................................... CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 169 36 100.0 38 .................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 243 36 100.0 36 .................................... CAGCGAAATACAGGCTCCACGACACGACCACAACGC 315 36 100.0 38 .................................... CTTTGCGAAGTCACCTCGCCCACACCGTCGAAGCGCCT 389 36 97.2 38 ............T....................... GCGGATGGTGGGCAAGTTGGCGCTGGGGTCTGAGTCAA 463 36 100.0 41 .................................... CTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGT 540 36 97.2 43 ...............................T.... TCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAA 619 36 100.0 38 .................................... TCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGT 693 36 91.7 30 .......................G.AC......... GCAGCACCAGCCTGACAATCTTATTCTCGC GAAAC [721] Deletion [759] 764 36 100.0 37 .................................... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 837 36 100.0 35 .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 908 36 94.4 0 ...............................TG... | ========== ====== ====== ====== ==================================== =========================================== ================== 12 36 98.4 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAG # Right flank : CGCCCCGGTGAGTCCGGAGACTCTCTGATCTGAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 209-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWXD01000090.1 Mycobacterium tuberculosis variant caprae strain ATCC BAA-824 M_tuberculosis_caprae_ATCCBAA-824_Contig136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ====================================================== ================== 208 22 100.0 53 ...................... GAGGGGACGGAAACCCTCAGCTCAGCATCGCTGATGCGGTCCAGCTCGTCCGT 133 22 100.0 54 ...................... GAGGGGACGGAAACCCAACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGA 57 22 95.5 0 ...................T.. | ========== ====== ====== ====== ====================== ====================================================== ================== 3 22 98.5 54 GTCGTCAGACCCAAAACCCCGA # Left flank : A # Right flank : AACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:-0.25, 7:-1.10, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 3-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWXD01000130.1 Mycobacterium tuberculosis variant caprae strain ATCC BAA-824 M_tuberculosis_caprae_ATCCBAA-824_Contig296, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 3 25 100.0 48 ......................... GGGACGGAAACCCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCG 76 25 100.0 47 ......................... GGGACGGAAACCGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 148 25 100.0 47 ......................... GGGACGGAAACTGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 220 25 100.0 52 ......................... GGGACGGAAACTCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 297 25 100.0 51 ......................... AGGACGGAAACTCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 373 25 100.0 48 ......................... GGGACGGAAACTTGGAGCGTGTCACCGCAGACGGCACGATTGAGACAA 446 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ==================================================== ================== 7 25 100.0 49 GTCGTCAGACCCAAAACCCCGAGAG # Left flank : AAG # Right flank : GGGACGGAAACC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //