Array 1 10613-16470 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRQT01000034.1 Clostridium perfringens strain AF30-3 AF30-3.Scaf34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 10613 29 100.0 36 ............................. AGGATCATCACTTCCTATATGTTAAAAACAAAAAAG 10678 29 100.0 36 ............................. GTTTCAGAAATTTCAGTTTTTAAACTTTTCATTTCT 10743 29 100.0 36 ............................. TTTTGTAATTTGAAAGGGACTTGAACTTGTCCCCCT 10808 29 100.0 36 ............................. TAAATATCATTTCTTAAACAACCTAATTATACTATA 10873 29 100.0 36 ............................. CCGTTTTAAAGTGTCCCTCGGGAACACTTTTTTTAG 10938 29 100.0 36 ............................. AAAGTACCAACTTGCAAAGTATCATTATTTTTATTA 11003 29 100.0 38 ............................. GGTATATTTCTAAAGAATGAGGGATAAACATGAATTTT 11070 29 100.0 37 ............................. TAATTCAATGTGGGGTAGATATAACTTAAACGCATTA 11136 29 100.0 36 ............................. TTACAAAGTAGAAGTCTGATTTATAAGGATATATTC 11201 29 100.0 37 ............................. TATTTCTAAAGCTTTAAGTTGCTGGTAATAATCCATC 11267 29 100.0 37 ............................. ATAATAGAACATATTATAATTATATTAATAGTTTTCC 11333 29 100.0 36 ............................. TGGAGCAATAATTATTTAGATGAAAAAAATGGAGTT 11398 29 100.0 37 ............................. ACAGAAGAAATTAAAAATACTATAACATACAAGTTAT 11464 29 100.0 36 ............................. GAGCAAGTTGAAAGACAAAAGTCTCAAGATGAATTT 11529 29 100.0 36 ............................. TAATAGAATTTGTGAAAGTACATAAAAAAGAAACTA 11594 29 100.0 35 ............................. GGAACAGCAGGAGCATTTAAGTTTGGATCTAAAAC 11658 29 100.0 36 ............................. TTTGATTTATGGAAATCACTCTGGTTTCAAAACTGG 11723 29 100.0 36 ............................. GATGCACTAACTGGAGTATATGAAATCTTAGAGAAG 11788 29 100.0 36 ............................. AAGTAATAATAAAGTTGCAAGGATATTAACAGGTAG 11853 29 100.0 37 ............................. TAAAAAGCCGATTAATGAATTTTGGGAGTTGTATCGT 11919 29 100.0 37 ............................. AAAAAAGACTTGTTTGAAGCTAATTTACCAGCAGGGG 11985 29 100.0 37 ............................. CTTATGGTGGAACAACACACTAGCCCTCTTGAACACG 12051 29 100.0 36 ............................. ATCTTTAAATAGAGATAAAAAGTTTAAGAGTTTTGA 12116 29 100.0 37 ............................. AAAACTTACCGTTTATTTCTATTTAAGAACTGTTATA 12182 29 100.0 37 ............................. ATGATGGGACAAGCTAAGAAAATGTTAGAAGGCAAAA 12248 29 100.0 37 ............................. AAAATAATCAAACAAGAGGTTAGTTATCTATTAGCAA 12314 29 100.0 36 ............................. GTATACAATTTAGACAATAAAAATGATGACGGATTT 12379 29 100.0 37 ............................. CTTGATACATCTTGCTTTTATTTTAGTTCCGTAAGTA 12445 29 100.0 36 ............................. CTTATAGCAATTTGAGAACCTTTCGAAAGATATTGA 12510 29 100.0 36 ............................. ATGTGGATAGAACTGTATGAAGAAGATGGAAAGACA 12575 29 100.0 37 ............................. AGTTGTGTATTTAATTCTACTGTTCCACCTTTAAGAG 12641 29 100.0 37 ............................. TAGCAGGTCAGCACACATGAAAGGATTACAAGGGTTT 12707 29 100.0 36 ............................. TATATAAAACAGTTTAAAGAGGAGGGTATTATTTAA 12772 29 100.0 37 ............................. ATAGCTAGATTCACAATAGCAGTAAACAGAAAGTTCA 12838 29 100.0 36 ............................. ATATACTAGATGTATTATTTACTAAAGAATCAATGG 12903 29 100.0 37 ............................. ATGATAGATGATGTTAAGTTAGAAAAGCAACTAATAG 12969 29 100.0 36 ............................. ACAAAAAACACTTATAGATTCGGCTACTGGAAAAAT 13034 29 100.0 36 ............................. AGTAAATTCAGCTGGTAGTTTTATATATGCTTTACC 13099 29 100.0 36 ............................. AAAATTTATAGTGTCTAAAAGTAATAAATTAATAAA 13164 29 100.0 36 ............................. ATATCCTATGATACTATAACAAAGAGTTTTAATAAG 13229 29 100.0 37 ............................. TTGTTCATTGCTTCTAATTCACCACTTATAGTATTAG 13295 29 100.0 36 ............................. ATTTTTATAGGCATTTCTTAAAGGAATAATAACTTT 13360 29 100.0 36 ............................. AATACTAAGAGCTTTTAATTCATCTTTTTCATTTAA 13425 29 100.0 36 ............................. GTGGCCTAAAAGAATATGTTATACTAGGAACAAGCA 13490 29 100.0 35 ............................. GGATGATTTAGTTCAAAAATACGAAGAAAAAATGT 13554 29 100.0 36 ............................. GGGATAAAACATTAGAATATGACACATATATATTTA 13619 29 100.0 35 ............................. CTAAATAAACTTAATACCTTCATAAACTCTTCCTC 13683 29 100.0 36 ............................. CAAGCTATGAATAAAGATAATGTTACTGTATCCTGG 13748 29 100.0 36 ............................. AAAAAATATTTTATACTTTCTTCTAATGATAATTTT 13813 29 100.0 36 ............................. TCATTTACTATTGATATTCTATTCATATTACTTACC 13878 29 100.0 36 ............................. TTCTGTCTTTCTCTAAGCCACTCTAATCTCTCTTCC 13943 29 100.0 36 ............................. GTAATCTTTTGAATAATTTCTTTCTGTAAAGTTTGG 14008 29 100.0 36 ............................. TAATTATAACTTTAAACTTAATAAATAAACAATATA 14073 29 100.0 36 ............................. TAATTTTATCTCCTTCCATATACTTTTTAATAGTTT 14138 29 100.0 36 ............................. TAATAATAAACGGTGGAGGGATGGGCACTAGTCAAT 14203 29 100.0 36 ............................. ATTTTATGAAGCTGATCTATTCTTTCAGTATTAACA 14268 29 100.0 38 ............................. CATTCTTCAGCAAATTTTATTATTTCTTGTTTTGGAGT 14335 29 100.0 37 ............................. GAGAGAGTAAATTGGTGTAATGATTATTTAGAAAAAG 14401 29 100.0 37 ............................. GCTTCTAATTTAGGAATAAGCGAAGAATTAAAAGAAA 14467 29 100.0 38 ............................. ATGGAAACATTAGCGGGAGGAGTATTTGGATCTAGTGA 14534 29 100.0 36 ............................. TGAGCTTGGACTTTATAACTCATTAAAATTACACAA 14599 29 100.0 36 ............................. ATGAAGCGAAGAAAGGGAATACATAACCTTTCATAA 14664 29 100.0 37 ............................. AGCTTTTAATATAATAGTTGAGATTGCAAACACAAAT 14730 29 100.0 37 ............................. GATCAAGGTACAAAGAAAGAAGAATATTCTGAAGAAG 14796 29 100.0 37 ............................. ATGACTTTACTAACAAAGTTATGAAAGGTCGCATTCA 14862 29 100.0 37 ............................. CAAGTCAATCATTTATTGAAAGAAACTTAATCACTAC 14928 29 100.0 38 ............................. TCAACTAAGAAATAATCTATTTGTGTTTGATTTTGCTC 14995 29 100.0 37 ............................. TTCTCGTAATCGTCAATGATACTTTTAACGGTATATT 15061 29 100.0 37 ............................. TAGCTAAGGTATGGGGCAACTTTTCTACCGGGAAATC 15127 29 100.0 38 ............................. TAGAGAATAATGCTAAAGAAATTATAAATTTAGTTAAA 15194 29 100.0 38 ............................. ATTGTAGAGAGTGAATTAATCAATAATTATAGTAGTGT 15261 29 100.0 36 ............................. AATTTCAATCCTAACTTTGCGAATAATAGATTGAAC 15326 29 100.0 37 ............................. ATTATAGAAATAAAGCTTATAAGAAATTATCTAAAGC 15392 29 100.0 37 ............................. TCATAATACCTCCTCGATGTTCTCTACAAGTATAATT 15458 29 100.0 37 ............................. CGGGATTTCACCAGCGGGTGATAAAATAATAAAGACT 15524 29 100.0 35 ............................. GTCTATGCTTCAAAAGATGGAGTAGTTACAGTACG 15588 29 100.0 37 ............................. TATGAGGTTATGGCTAGATATTTAGCAAATGCTATCG 15654 29 100.0 37 ............................. GAAGAAATAAAAGAAGCAGTAAATCAGAATAGACAAC 15720 29 100.0 36 ............................. AAGCATAGTTAATATACTAAACATTTGTGCATTAAA 15785 29 100.0 35 ............................. TATTAATTTGAATTTCTTTTTTCTTTTCAATATTT 15849 29 100.0 37 ............................. GAGTTATCTTTAAGTATTTATACTGAGGCTTGATAAG 15915 29 100.0 37 ............................. AACCCACCGGCAGGAGGAACAGGAGGCCCAGGACAAA 15981 29 100.0 36 ............................. CCGACTACACTAGGAACATCAGTAGGAACAGAACCA 16046 29 100.0 36 ............................. TTGTATTCTTCATTTAACATAATTTTAAATTCTTGT 16111 29 100.0 36 ............................. TATAATGACTTCCAATTAGAGGAAGGAACTCAATCA 16176 29 100.0 37 ............................. TATTTCTACTATAATTAACTCTTACGCCATAATCTCC 16242 29 100.0 37 ............................. ATTTATTAAAGATACTTTCTTTGGTGCAGTTAATAAG 16308 29 100.0 38 ............................. TTTTTAGATGCATAGTTTAAAGTATCATATTCTAGGTC 16375 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 16441 29 86.2 0 .................GAA....C.... | C [16468] ========== ====== ====== ====== ============================= ====================================== ================== 90 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACAGCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //