Array 1 96147-94715 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000013.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96146 29 100.0 32 ............................. CAATCAATTTTACCCCCCTTAACTTTTTCAGC 96085 29 96.6 32 ............................T GACGTCGAGCGAGTCAAGATCGCGCGAGAAAT 96024 29 100.0 32 ............................. CACACGCTGAGCTGTACAACCGCAAAATTGAT 95963 29 100.0 32 ............................. GCTTGCTCTGCAAATTGATGAATTAGAAAAAA 95902 29 100.0 32 ............................. TAACCCAACTGAGTTATCAGAGGTTGGAATTG 95841 29 100.0 32 ............................. CTGAACTTTAAAGGAGCGTGTTTTATTGATCA 95780 29 100.0 32 ............................. GATTTCGGATCGTATGCGCTAGGGCTTGGTAA 95719 29 100.0 32 ............................. TTTATATCATTAATGAGCATAAAATGGATCGC 95658 29 100.0 32 ............................. CATTTCCATGGCGATGCATAGCTTTATAAATA 95597 29 100.0 32 ............................. ACCTATCAACGCATAGAACGGGGGGAAACGGC 95536 29 100.0 32 ............................. GTAATCATTCACGAAATGGATTATGACGAAAC 95475 29 100.0 32 ............................. CAATTTGATGATGAAAATGCCCGTCAACGAAT 95414 29 100.0 32 ............................. GCTAAGAGCCTTTCACCAAGTCAAATCAATAA 95353 29 100.0 32 ............................. TTTCTCATATTCCTCTTAACGATCCGGAGCCC 95292 29 100.0 32 ............................. GTCCGACAGCATCAGCTCACCGGCCATATCTG 95231 29 100.0 32 ............................. ATCGACCGGGGCGTATTCATTGGTCTGGTTCG 95170 29 100.0 32 ............................. ATGTCGACTTTGAGAACAACATTATCCATATC 95109 29 100.0 32 ............................. ATGTCGACTTTGAGAACAACATTATCCATATC 95048 29 100.0 32 ............................. GACCCATTGCGACCACGGTCGCAATCACTCGG 94987 29 100.0 32 ............................. GCGGAACGTAAACAATTATGGCGTAAACGCGC 94926 29 100.0 32 ............................. GCGTCGTTTTTGCCATTGGTAGCTAGTTGATT 94865 29 100.0 32 ............................. TTGTTCAATGTGCTGCTTTTGATCTGCCATGC 94804 29 100.0 32 ............................. TAACGGCGAACCGCAACCAGCAGGTCATTATC 94743 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGTACACACGGGGATGAACCG # Left flank : GGGCGAATTGGTGATCGTAAGGGATGGTTTCGTACATTATTTGACTCCTGGATAGTGATCAAAATAATTTCACCACGGGAGTTCCTACGCTCGGGTGGTGAACTGGAACAAGGTGTAGGAATGCCGTAATCCAGGACACGGCCAGCCAAAGCTGCCTTGCCCAGCTCACCATAATTCAGATGTGCTGAGGCCGCATATAGTAAAAAACCAACGTAAAGTTAGCAACCTATAATGTCTGGATAGATATCAGCGGGTTCCTACGCCCGGCACCGGATTTTGCCAGTGCAGAGCGTAGGTTATCTGTTTTTCGGAAAATAAAAGTATGAAAAAAGTATGAGATTTTGGGTGTGGGTTCTCAAAATAATCAGCCGATGAGCGTCTGGAATTGATAAAATTCGACTCAGTTGCAGCGCTTTGAAAAGGTGGATTTTGCTCTTTAAAATGTTGGTAGATTGTTAATGATGAAATTTCTTTTTATTGATCAATGATCTATATTTAGA # Right flank : AGCCATACATATGTATTTACATGAGCCTAGCAAATCTAATCCCGAATTTGAGTGGCTAAAACTCATTTCGGGGTATAAATGAGTTACCACCTTTTTAATCATCAAAATTTTCTCGCAAACAATACATCTACGATGCACCGCATGTGATTCAGTCGCGCGAGCTGGCTGGTGGGGCGGTTGCGGTTGCGTCATGACAGTCAGGGCGTGACAGAGCTCTCCTATGACCGCAGCGGGCGGTTGACCAAACAGGTGTTGTCGGGCGGTCAGACCTGTTTTTATGAATACAACGCCTATAACAAGGTCACCAAGTTCACCGATGAGCAGGGCAGAGCCACCACCTACGATTATGAGTTCCCGCTGCATCTGGTGACGAAGAAGACCAACTAGAAATTTTGATACTGAGAATTTCGATGAAAAAGCTTACGAACTCCGTTGGTAACACCAAAATTCACAGCGAAATAATAAGGTGAACGAATATGCCCGTCGATTTTTTAACAAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACACACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 809-520 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000216.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 808 37 97.3 47 .C................................... TACCATCACTGCAAACCGCACAAGGTGCAGGAACAGCTCAGGGCATA 724 37 100.0 47 ..................................... CTCCATCACTGCAAACCGCACAAGGTGCGGGAACTGCTCAGAGTGTC 640 37 100.0 47 ..................................... TGCCATCACTCCAAACCGCTCAAGGCACAGGAACCGCTCATAGTATA 556 37 94.6 0 .............................G......G | ========== ====== ====== ====== ===================================== =============================================== ================== 4 37 98.0 47 CAGGTGACTCAGGGGCCGTCAGATACATCAGGCACCA # Left flank : GGCGCAGGAGCGGCTCAGAGCGT # Right flank : TTCAATCACAGTCAGCAACAACACACAGTATGCAACTGACGCCGCTGGCCGATGATTCGGGGACGGCACTTCAGTCAGGACAGGCTCAATCGGATTCCGGTCTGGCAGCACAATCCACACCGAATATGGCATCGATGACCCGTCCTGTGCCTCAAGGCGGTAAATCAGCGACAACAGTGACGCTCAGTAATAGCAGTGCTGTCACCGCACCGACGTTGAACTTACCCAATCAGAACAGTATTCCATTTCCCGACTATCGGCTGCCGACCAGCCCGCATGGTTTATTTGTCTTTTCTGACGGGCCACAGAGTGATTATCTGATCGCAACCAACCCTGCGGTCACCAATCTGAATAATTTCCTCGGCTCGGACTATTTCAAAGACCAGTTAAATTACGATCCGGAGCAGAAAGAGAAGTTTCTCGGCGATGCCTATTACGACACCAGAACGATCACGCAGGAAATTTTTGAGCAGACCGGCAAACGATATCTGAGTGATGAT # Questionable array : YES [Potential tandem repeat] Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGGTGACTCAGGGGCCGTCAGATACATCAGGCACCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 42874-42367 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000063.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================= ================== 42873 35 100.0 32 ................................... AAAATGGCTTGTCTCATGTTTAATTTGTTTGA 42806 35 100.0 33 ................................... CTTAGTTTTTCCCCAACCTGATGAGTAATAACT 42738 35 100.0 32 ................................... TTTTGAGTACATCCTCAAGACGGTTGTACTCA 42671 35 100.0 32 ................................... TTTACCTGGATATACCCGGCTTCAAAATCCAC 42604 35 100.0 33 ................................... GATGTATCTGTTGCAGAAACAAGGATGTAACAA 42536 35 100.0 33 ................................... GTATTGGGTATAGATTGAGGTAAGAACTGGTTG 42468 35 100.0 33 ................................... GTATTGGGTATAGATTGAGGTAAGAACTGGTTG 42400 34 91.4 0 ............................A-...G. | ========== ====== ====== ====== =================================== ================================= ================== 8 35 98.9 33 GTGGAAATACCTTGGCCGAAACAGGCCGTTAAGAC # Left flank : TTTAGTGTATTGAGAAGAGGTTTATATTTATACAAGCTATTTAAAATCAAATGGTTAAATTGACATTAAAAGTTGGCACGTATACTGCAATAATGACAGTGACCCTTATTAAGCCGAGGGTCACCTAGCCAACTGACGTTGTTAGTGAACCTATTTTGTTCATATTGATAGCCAATCACAATTTTGTGGTTGGCTTTTTTTGTTGATAAAAATCGATAGTGAGGTGGTTCTTTTCATTTTTTAGGCGTGAGTCATGCTACAAAGAGAACATCTGGTTATCGAACAAGGTTATTCGGTTGCAGCTGCAAAGTGGTTTTGTGATCATCTTACTTTATCCGTCGGGGGATTCGATGCTATGATCACTTGTCCACATGGGATTTGGTCAATTGGCTGAACCTGACTGAAATCGATTGGAAATGGGGATTTTGATATGTATAAACGTACAGATGCGCCAAATCATCGTTTTCAGGCCTTGTCTGATGGGGGTTGCAGTGAGTGCT # Right flank : TGCCATATTGCATGGCAGCCTTTCGTATTTCTGAAAGAATAAAAGCGGGCTTACCCGCGGTTAGCAGATAATAATGGCGTTCGGCCAGTCGGCGATCCGGCCTTCTCCGATGACGTGAGATTGTTCCCGACAGTTGGCGCACAGACGATAAAAGCGCAGTTTGTCCGATTCTTCCAGCAGTGGACGGAGCTGTCCGATGAGCTGATGGAGTTGATAGGGTGTTTTGACGGCGATTTCAAATACCGATTCCTGAACCCGATCACCGTAGCCCAGCAAAATTTTGCCAACATTGCGGCGGATCCGGTCATCACTGATATCAAAACAGACCGCGTAAATAATTATCGGCTGTGCCATGCCTGAAATGTCTCCCCGGTACGAATGGTTGTGATCAGACTGTGAATCTGTTTGTGTAACTGTTCAAACAGCGAATCAGCCTGTGATGATATGGTTTTTGTCTGATAAGTCAGTTCATGTAACAGTGCTGACAGATAGCGCTGGCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATACCTTGGCCGAAACAGGCCGTTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 26424-26156 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000057.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26423 28 100.0 32 ............................ AATCTCCGCAAGCATATCGAAGACCGGGTTTT 26363 28 100.0 32 ............................ TTAGACCAGTAATAGCCATGGATGTGCCACCG 26303 28 100.0 32 ............................ GCATGTCGGTGTAGGCGCACATGCCTTTTTCT 26243 28 100.0 32 ............................ ATAATTCCCCTTTTGATTTTATCTGTACTCAT 26183 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CCCTGAGTTCTTAAAACTCAGGTTTCGGTTGGTGTTGGGGGCTTGAAGTGTGGGGCGTGATTTTCTGTTGCATGGGGTTAGTAGTCTCCGGCCCCAAATTTTGACGCACAATTACGTTTTTCGGTTTCAGAAGCATCGGAGCACGGTGCGCCAGTTCATCTTTCAGAGATGAAAGACGAACCAGAAAATCTTTTTTATTTGACGGTGTCGCACGTTGTCCAGAACCGACTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTCCCGGAATGGTTTTCTTTGTTCAGTGGTTGATTTGGATTGGGTGAAACATAGCAAAAAGCCAATTTGATCGATGCGCTCAGGGTAAAATTTAAGTTGTTTAGACCTTCTTTTTTTGCCCCTAAAAAATAATCAATAAAAACAGCAAGATACAGAAGGGCGATTTTAACAAGGTAAAAAAGGGTTTTTGCCGCTAACCGCTTGCTGCCGTTTATTTTTTCATGATATGTTCATT # Right flank : CTCGCCGCCGGGCACTCGAACATGCCCGGCGTCAGACTCTGGTTTACTCATCAAGCATGATTTCTTCTTTCCGCAGATTCATTTCATCAAAGGTAATCAGATTATTGAGGTACAGGAGCACCTCTCGCAGTTCATTTTGATCGATACTGGGGTGCGAATTGGTGACAAGACAATCAATCAGACAGTTGCGAGCAGTCAGGTGTAAATCGAGGTTGTTTTTTGACATGGAAAGCCTCTTCGAGAATATGAATTTCCCCACCACGCAAAGGTTCCAATCTTTAGGTGGTGGGCTGAACAAGGTTGGAACAACCGCCTCGAAGTACGGCCAGCATACGCTGCCTTGCCAGCTCACCATAATTTGAGCGAATCAAGGCTACACATAAAAAAACACTGAGACAAGTTCAGCATATGATGTGCTATCGAGTTTTATCGGTGTTCCAATCCCGACACCGTTTTTTTGGTGCTTGCGTAGCGTAAGTGGTATCAGGGATGTTGACGAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 394-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000020.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 393 35 100.0 31 ................................... TTGTTCATAATTTACTCCTAAGTTGTATAGA 327 35 100.0 33 ................................... TATTGAAGCTGCTCAGGCAGGTGTGAATGGCTA 259 35 100.0 32 ................................... TTTAAATCATTGAGTTCCAACATAACCAGTTA 192 35 100.0 34 ................................... ACAAGAATTTTCCCAACATCATCAATTATAAAAT 123 35 100.0 32 ................................... ATTAGTTTCTATTGGCTCCCCAGATGTATTTT 56 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 6 35 100.0 33 ATCGGAAGACACTGGCCGAGACAGGCCGTTAAGAC # Left flank : CATGCACGGCTATTTTTTCAGTTGACGCACATGTAGAAGTGACCGGCAATTCAATTGGTATCTGATAAGTCGCCATCCCTTGATGAACACTGAGTTCTCCCGGCAAAGTACCGACTGTTTCAGTGATAGCGGCAGATTGTGCATATGATGCAGACACAAAAATATTGACTTCTATTCGATTAATGCGCTGAATGGGCTGTCTCCCGATATTGAGGTTCAGCCCCCATAGGATAACGGTCCAAACTTTTTGGTGTGCTCCCGCGAGCCCATCGGCAGATCGGTCAGAGTGCACAATTCAGTATGAAACCTCTGCACGCCTCGTTTAACGCTTTGAATCCAAACCAGAGCCGATGATATAATCAACGCTTGTCTGACGAGATTGGCAATTGGCTGATCCCCCTTGAAAAGGGCCAAAAGAATGAGGTTTTCTATGTATATTTATACAGATCGGCCAAATTGCTTTGCTCAGCCCTTATATATCAAGGCTGTCAGGGGGCGCT # Right flank : CCTCCTAGAGCCCATGGTGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAAGACACTGGCCGAGACAGGCCGTTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 137428-138248 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000004.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 137428 29 100.0 32 ............................. GGTACTCATCGCATTTCTAGCGGGGAGATATA 137489 29 100.0 32 ............................. TATATTGAATCATGAACAGTCCACGACAAATG 137550 29 100.0 32 ............................. CCTTTTGGCTTGTTCGTACGTTGGCTGAAAAT 137611 29 100.0 32 ............................. GCGTCAAACTCAGGGCCGTTCGTTAGCCCATG 137672 29 100.0 32 ............................. CTCATCTTCCCCGTCCATTTCGTGAATGATTA 137733 29 100.0 32 ............................. CCGGTGTCAACCCACGCACTACAGCTCGTAAT 137794 29 100.0 32 ............................. CGTTCTCTCACCGCCAATAGTCAAGTTTGGGT 137855 29 100.0 32 ............................. GCGTCAAACTCAGGGCCGTTCGTTAGCCCATG 137916 29 100.0 32 ............................. GGCGTTGATTGACGAACTGAGGACCCTGATTA 137977 29 100.0 32 ............................. ACAAACAAATCCTATCGAGACCAAACGTCCAC 138038 29 100.0 32 ............................. CGTTCATTACCGACCGGGATTCGTGGGAGTAC 138099 29 100.0 32 ............................. GCGAGACCTTCGACGCTTTTATAAAGTGCCTC 138160 29 100.0 32 ............................. CGGATAGATAACATTCAATAACATGTAGTTAA 138221 28 75.9 0 ............CAT........-..TTC | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : AGTATCTGGGGCGCTGTTGGAGATGCTATTGAAATCGGCAAAATTAATCGCGCACCAAACCGCTGCACCTCAATTTTCAATCTTTCCCGCCTCCGGCCCCAAATTTTAACGCACAATTACGTTCGGCGATTTCAGAGACATTGGTGCTCTGTGCGCCAGTTCATCTTTCAGAGATGGAAGACGAACCAGAAAATCTTTTTTTGTTTGACTGAGTCGCACGTTGTCCAGAACCGACTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTCCCGGAATAGTTTTCTTTATTGGGTGGTTGATTTGAGTTGAGTGAAACATCAATAAAGTCAATTTGATCGATGGGAATAGCTGATCAGGAAGAGGATGAATCAATTGCACACTAAACCCACAATAGCTTCATAACCTGCCATATTGATGACCTTTAAAACCGCCCCAAATGTTGGTAGATTGTGAATGTCGAAATTTGTATTTATAAATCAAATGACTACAATTAGA # Right flank : CACTGATGATTGAGTGCTGATAAACATGATTATTGATTGTATTGTTATTAATTGTGTAAATAAGCTTGAACTTCTTCTTGGTCTGTCATTTTTTCCGTATTTAGAACAAGAGGTGTGTTATTTTTGATAACATTCAATTGACTACTGGAATCAACCTCTCATGGAAGAACCTGCCTACTTCTTGTACTGGGGCAAGGCGAGTCAAGCACTGACATCTCATGGGGATGACTACCATCTTTTGCCTTATCATTGTCTTGATGTGGCAGCTGTCGGGCAACAACTATTACATCCTGAAAAACCACTTACCTGTGAGTTGGCTGCATTTCTGGGCATTTCAACAAGTCAGCTCAATCGTTGGTTTACTTTTGTGCTGACGTTACATGATTTAGGCAAGTTTGCCTCCGCTTTTCAGGCGTTACATCGGCTACCTGATAGTTCATGGTTACCACATTGCCGTCGCACATACGATGGCCGCGAATATCGACATGACCGATTAGGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44250-43733 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000001.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44249 29 100.0 32 ............................. CGGGTGAGCGTCGAGTTTTCGGAGCTACATCA 44188 29 100.0 32 ............................. TCTTTTGCAATCGCTTCGTTTTGCTCTTTAGT 44127 29 100.0 32 ............................. GTGCAGATCGAGAACCTGCCATTTCAGGAAAT 44066 29 100.0 32 ............................. GCCCAATTAAACATCACCCGACCACTGAACCC 44005 29 100.0 32 ............................. CAATCCGGCCTTTCGTGATCAGACCTCCACCC 43944 29 100.0 32 ............................. ATTTTGAATACTTCATTGAGTGCAATGTTGAT 43883 29 100.0 32 ............................. AACTCCGCAGACACATCCACAGACACGTCCTT 43822 29 100.0 32 ............................. ATTTTTCAAGAATAACCCCATCAATCTTTTTT 43761 29 96.6 0 .......................T..... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGTATGCACGGGGATGAACCG # Left flank : TAACGCTGAGTTGGGTCGTGTCGAGGATCGTATTATAAATATTGACGGCCTCGACCTTAAGAAAGCAAGGTTGCTCCATAGATGCACACTCCGTGTCTAATCAACTGAGAGTTATTCATCTTATGTCGTATTTTGCGGGTTTCATATATTCCGACAGTGAAATTATGGTTGTTTGCTGACACTGATTTAACAAAACCTGAATGATTTCACATTTCTGAGAGAGAATATTTATGTGATTTTCGTTCCATAAATGAGACTGATTCACCTACGATATTCAGTTTCCCCGTGTTCGGCTTCGGTACATTGCCCGCAATGTGTTTGTTTTATGAGATAAGGATTGGCAATGAAAATAGCCTGTAGAGATCACCTTTTGGGTGGGAGGCTCTTTACGCAAGGAGATGCCCGTTAGAAGATATCAATGTCTGGGTTCAAAGACAGAAAATGTTGGTAGATTGTTAACGACGATTTTTCTTTTTATAGATCAATCATCTATATTTAGA # Right flank : AACAGGTTTGTCGGGGGAGGATCGGGGCTGAGCGCCCCTGAGGGCTGTATCTTTACTTTGATTTTACCAGTCTCCGGCTCCGAAATTTGACGCACAATTGCGTTCCTCAATTTCAGAAACATCGGTGCTCTGTGCGCCAGTTACTCTTGCCAAGATGCAAGAGTAACCAGAAGATCTTTTTTGTTTGGCTTGGTTACACGTTGTCCAGAACCAGCTTTTACGGGCGTCCTGCCCGGAAAAGCCTAACCATTCTTCCTTGAATGGTTTTCTTGGTTGGGTGGTTAATTAGAGTTGAGAGGAACATTTTTAAAGCTAACTTGATCGATGATCTCAGGGTAAAATTCAGGGACGAATTTTAAGCTTTTCGTGAGCAGGAGCGAATAAAAGCGTCCCTGATTACGTGTGCTGAACAAAAGTCTCTGGGGCGCTGTCGAAGATGCCATTGAAATTGATGAATATTATTGCGTCCCAAATCACGGCGCCTCAACTTTTAATCCTCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60563-60869 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000001.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 60563 35 100.0 34 ................................... GGCTAACTCTTCAGATGTATCACGAACTAGATCA 60632 35 100.0 36 ................................... TTACTTTTACTCCCTACACCATTAGGCCAAAGCTTC 60703 35 100.0 32 ................................... CTTACTTCTTCAATTGGGGTTCGTGCATCTTT 60770 35 71.4 28 ............TA.......G..A.G..AA.CCT GCTAGATTTTTAGATAACAAAGCTTCCT 60833 35 91.4 0 ............................A...A.A | T,C [60859,60862] ========== ====== ====== ====== =================================== ==================================== ================== 5 35 92.6 33 GTTTCAGTAGGTCTGGCCGTTTAGGCCGTTGAGAC # Left flank : GGCTTCAACCGGATAAAGGTTGCAATGATTCAGAGAGGCATGCCAGCCATCGAATACGCCGAAACACTGAATCGGCCATGCTTGCGTTAATGCAATATCAAATAAATCGACTCCGGTGAGTGTGTCCATCGGAGCAATCAGGGTATAGCGAGGGTTCATTAGCTATCCTTAGCAAGAGCAGAAGATTATTTTCTATCATGCAAAGAAACATCACCGGGATCCAACGGTGATATATGCAATTGTGAATTAAATCAACCAATCGCATATTCAAAATGACAAAAATAACGTTGTCCACAAGCAATCATCCTGTCACCAAGACCCCCACACCGCCTGCGCCATGCTGCTCACAAAAACGCTATACAATCATTGTATTAGCCAGAAATTCCCGATATCTTATAAATTCTACTGACATTGTTCTGACAGGTGAATCTGTGGATAACTCGAGGCCATCCAAAACCGCATTGCAAGTGATTGATTTTAAACTTTCATTACGGGGGTGG # Right flank : AATTTGGCAACCGCTTCTCCGTCCGGTTGTTTCACCCAATTCAAATCAACCACCCAACCAAGAAAACCATTCAAGGATGAATGGTTAGGCTTTTCCGGGCAGGACGCCCGTAAAAGCTGGTTCTGGACACCGTGCGACCAAGTCAAACAAAAAAGATTTTCTGGTTCGTCTTTCATCTCTGAAAGATGAACTGGCGCACAGAGCACCGCAGTTTCTGAAATTGAGAAACCTGATTGTGCGTCAAATTTCGGGGCCGAAGGCTGGGGAGATGAATATTGTGTCGCTGTTGTTTGGTGCGCAATGAGTTTATTAATTTCTGCGGCATCTGATGCACGCGCCCCAGATACTTTTGGCGTTCCAAAAGTACCCAAAAGAACGGTTTAGTTCGTGGGCGCTGGCCGGGTCGGATTGATTCGCATCCTGCTCAAGCAATCCTGAAAAATCGTCCATGATTTTTCACCCTGAGATCATCGATCAATTTGGCTTTAAAAATATTTCCC # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGGTCTGGCCGTTTAGGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 65984-66368 **** Predicted by CRISPRDetect 2.4 *** >NZ_FULF01000001.1 Vibrio gazogenes strain CECT 5068T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 65984 35 100.0 34 ................................... AATGTAGGACATTATGAGCCATACAATCAACACT 66053 35 100.0 34 ................................... AATGTAGGACATTATGAGCCATACAATCAACACT 66122 35 100.0 34 ................................... GCCCGCACGCGGGCTTTTTTTTCTGCTACACTCA 66191 35 100.0 35 ................................... CATGCCTGCAGCATGCATGTACTTTTCTTCTCTGG 66261 35 100.0 36 ................................... TTTTTCTAAATAAGCAGCACCTAAAGTATTACCTGT 66332 35 82.9 0 .....................G..A..CA...A.A | T,A [66358,66360] ========== ====== ====== ====== =================================== ==================================== ================== 6 35 97.1 35 GTTTCAGTAGGTCTGGCCGTTTAGGCCGTTGAGAC # Left flank : GCGTTTTGGTGAATCGATTCAACCTTCTGATGCATCATTCCATCACTTTGTATTCATTCAGGGTGTACGCCTTCCTGCCAAAACTGATCGCTTATTGCGGATGATGCACTGGATGATAACCGGGGTGGTACAAGCGTTGAACTTTGCTTGCCACTTCTAAGCCAGGTATGCATTCCCACGCGGAGCGTGGGAACGAGGTGCAAAGAAACATCACCGGGATCCAACGGTGATATATGCAATTGTGAATTAAATCAACCAATCGCATATTCAAAATGACAAAAATAACGTTGTCCACAAGCAATCATCCTGTCACCAAGCCCCCCACACCGCCTGCGCCATGCTGCTCACAAAAACGCTATACAATCATTGTATTAGCCAGAAATTCCCGATATCTTATAAATTCTACTGACATTGTTCTGACAGGTGAATCTGTGGATAACTCGAGGCCATCCAAAACCGCATTGCAAGTGATTGATTTTAAACTTTCATTACGGGGGTGA # Right flank : AATTTGGCAAACGCTTCTCCGTCCGGTTGTTTCACCAACTCAAATCAACCACCCAACCAAGAAAATCATTCATGGAAGAATGATTAGGCTTTTCCGGGCAGGACGCCCGTAAAAGCTGGTTCTGGACAACGTGCGACCAAGCCAAACAAAGAAGATTTTCTGGTTCGTCTTTCATCTCTGAAAGATGAACTGGCGCACAGAGTACCGATGTTTCTGAAATTGAGGAACCTGATTGTGCGTCAAAATTGGGAGCCGGAGGCTGGAAAGGTTGAAAATCGAGGTGTGGTGATTTGGTGCGCAATTACTCTTGCCGATTTCAATGGCATCTTCGAAAGCGCCCCAGAGACTTTTGCCCAGCAGCAAAAGTCCCCAAAAGTGCCTTGAGTTTGAGTTCAGCGCACATAATCAGGGTCGGATTGATTCGCATCCTGCTCAGGCAATCCTGAAAAATCGTCCATGATTTTTCACCCTGAGTTCAGTGATCAAATTGACTTTTTAAG # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGGTCTGGCCGTTTAGGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //