Array 1 5327-4871 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPE01000023.1 Cronobacter sakazakii strain MOD1_LR632 LR632_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5326 29 93.1 30 ...........A.............G... CAGGAGGGCGGGAATATTTTCCAGACCGGC 5265 29 93.1 32 ...........A.............G... TGAGGGTGGTGACCTGCGAAATGGGGTTGTTT 5204 29 93.1 32 ...........A.............G... GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 5143 29 96.6 32 ...........A................. CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 5082 29 100.0 32 ............................. CGTGCGCAGGTCGCCGAGTGTGTATTGCGCCA 5021 29 100.0 32 ............................. CGAAGACCAGAGAATAGCCATAATTTGGCGGT 4960 29 100.0 32 ............................. TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 4899 29 96.6 0 ............G................ | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTGCCTATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCTAAGTGCATGATATCCATCATGTAACCCTCTGTTTTCGTGCATTGAAACAGCGGTGATACAACTTTCGTGTATCACTTAGGACGCTAATCAATGTCGCATCTTATGCTTTCCCGTCACGGGATCTGGTACTACCGTAGGGTCTACCTGACACCTCGGAAACGCCGTGAAATT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33034-31725 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTPE01000023.1 Cronobacter sakazakii strain MOD1_LR632 LR632_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33033 29 100.0 32 ............................. CATACGAACGCCGGCGTCACCGTTGGCGAATC 32972 29 100.0 32 ............................. AGTGCGCCCACGTCGCGTTTTACATTTGCGAC 32911 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 32850 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 32789 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 32728 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 32667 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 32606 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 32545 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 32484 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 32423 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 32362 29 100.0 32 ............................. CACCTGCGACCGCCGATTTTGATGAGGCGATC 32301 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 32240 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 32179 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 32118 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 32057 29 100.0 32 ............................. CATCCACTTCGCGTCGCGGCGGTATTTTTTGC 31996 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 31935 29 96.6 32 .C........................... CATACGGGTCATAGTCTGTGATTGTGCGGCCC 31874 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 31813 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 31752 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : CCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //