Array 1 106344-104975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026518.1 Deinococcus sp. NW-56 plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106343 29 100.0 32 ............................. TGCGTGAACCCAGAGCATCTAGACGCTGTAAC 106282 29 100.0 32 ............................. AACGGCGGGGCCAGCGCTGGGGAGTTCTTCTC 106221 29 100.0 32 ............................. GCCACGTTTCGGGCGAGGCGGTCCAGCTTGGC 106160 29 100.0 32 ............................. CTCAGCAACCGCTACCGCACCGCCAGCGGTCC 106099 29 100.0 32 ............................. ACGGACCCCAGCGCCCGCTTGCCTACCTTCAT 106038 29 100.0 32 ............................. GGGATGGACCCCGCGAAGGCGGCGAGCATCGC 105977 29 96.6 31 ............................A CACGTGGTTCCCAGTGGACCCCACCGACCCC 105917 29 100.0 32 ............................. CAGAACGCCCAGATTCAGCAGCAGATGGCCCA 105856 29 100.0 32 ............................. CGCCCACCTGGCCCGCCAGGTGCTCACGCTGT 105795 29 100.0 32 ............................. AGGCGAGGCTCTATGGTCAGCGGGTCGGTGGC 105734 29 100.0 32 ............................. AAGGGCTGCGGCGGATCCTTCACCGCTGGGGA 105673 29 100.0 32 ............................. GCGTCGGCCCTTTTGTAGCTGCCCGTCTGCAC 105612 29 100.0 32 ............................. TGCGGGCCGCCTTGGCGAGGATGCCCGTCATG 105551 29 100.0 32 ............................. GCAGCGGCGGCCCGGAGGTGGGTGTGAAGCCC 105490 29 100.0 32 ............................. GCTGAGGTCCGGTCAACCTCAGCCGCTCATCT 105429 29 96.6 32 ............................T GTCTTGCACGCTGAATTGCTCCACCATCACGG 105368 29 100.0 32 ............................. GGTGCGGGGGCGGGAGAGGGGGGCGCTGACCA 105307 29 100.0 32 ............................. AGGGCTTGGACCCGGACGGCACCGACGACGAC 105246 29 100.0 32 ............................. TCCCGAGCGTTGAACCACAGTTGAGCCTCGTC 105185 29 100.0 32 ............................. TCGTTGGCGAGTTCCTGCTCTCGGCGGAAGCC 105124 29 100.0 32 ............................. CGGCTGTAACGCGTCCAGCGTGACGCGCAGCA 105063 29 100.0 32 ............................. GCCGAGACGCAAGGGCTGTTCGCGGGCGACCA 105002 28 79.3 0 ...........ACC........C..-..A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.8 32 GTGTTCCCCACGGGCGTGGGGATGGTCCG # Left flank : CTGGGACGTGATCACGTCGGTCAAGGACCGGAACTTCCAGCGGGAGCTGATGGAACGCTCCAACAGCGTCGGGATGCTGGGAGCGTTGCTGGGCGCCCGGCACCGCGGAGCAAGCGAGGCGCTCACGCTGCTGCCCGAGGCGCACTTCGCGGTCAGCTCGGCCGTGCTGCGTGTGCAGGGCGCCGAGGGCCGCAGCCTCGACCGCTGGAAGGCCCTGCTGCGCGAGGCTGCCGAGCAACTCGATGAATTGCAACGCGCCGGGACGAAGCGGCTGGCGGCCGTGTTGAGCGGCGGACTGCGCTGAATCGTCCTGACCCCGCCCCCTCCTATGCAGAAGGGGGCTTTTCTCGTTTCTGACCTCTACACCGCGCAGGACCTCGCTGGCCCCCTAGAATACTCGGGGAGCCAATCCCGTGGTCTATGAAAATGTAAGCCGATTCCATGACCGAGGGTGGGCCTTGAAGCGGCTTGGCGGTAGAGTGGAGCTGCGTTTCTGGAGT # Right flank : TGTAAGACCCCGCTCCGTAGCCGCGCCTACTCCTGCCCTCCGGCCTCTGCCGCCCGCAGGGTGAAGTGAAAGGTGCTGCCCACCCCCAGCTCGCCCTCGGCCCAGACGCGGCCCCCGTGACGCTGCACGATCTTGCGCACGATGGCGAGGCCCATGCCGGTGCCCTCGTAGCGCTCGCGCAGGTGGAGGCGCTGGAACATCTGGAAGACACGTTCGGCGTACTCGGGTTCGAAACCGATGCCGTTGTCGCGCACGGTGAAGTGCCAGAACTCGCCCTCGCGCGCGGCCCCGACCTCCACGACGGGCGGTACCCCCTCGCGGCGGAACTTGACCGCGTTGCCAATCAGGTTCTGGAACAGCTGGGGCAGTTCGCCGGGCGCTCCCAGCACGGTAGGCAGCTCACCCGTCACGATCCGTGCTCCACTCCCCTCGGTGGCGCCGTGCAGCCGGGCAAGGGCCTCCGCGAGCGGCTCGGCGCTGGGCACGGGCACCAACGGTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 161733-159562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026518.1 Deinococcus sp. NW-56 plasmid unnamed2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 161732 29 100.0 32 ............................. CCCCGCCGTACATCGTCCATCCCGACGCCCAT 161671 29 100.0 32 ............................. TTGTCGCCACTATATTCATGCCCTTTTGCGCA 161610 29 100.0 32 ............................. GGCTGGCGCAGAACGGCCTGAGCATCGTGCAG 161549 29 100.0 32 ............................. TTCAAGCCTGCGGAGGGCGTGGGCCTCAATCC 161488 29 100.0 32 ............................. ATTGTTGCTGTAATGGAAGAGACCGAGTACCA 161427 29 100.0 32 ............................. GCGGGCGCGTGCTTGTCCAGCCACGCCCCCAC 161366 29 100.0 32 ............................. CCTGCCCGCGCCCCCTCTCCCACCGTGCGGAG 161305 29 100.0 32 ............................. AACCCGCTCCCTGCCACCGGAAGCAGCGTTGG 161244 29 96.6 32 ............................T GTTCCGCCGCGATGTACTCCGGCGTTCCTGCC 161183 29 100.0 32 ............................. CGAGAAACGCCATGTAGCACGCGGTTCTAATG 161122 29 100.0 32 ............................. CCCTCGGCCTACGTGTACCCCACGCATGTGGT 161061 29 100.0 32 ............................. CGCTACCGGCTGATTCCCGGCGGACGCCTGGT 161000 29 100.0 32 ............................. ATCACCCCGCTGCACCCCCTCACCGTCGAGAA 160939 29 100.0 32 ............................. GAATACACCGGCCTCTGGTACAAGCGGTTCAT 160878 29 100.0 32 ............................. ATCGTGATCGACAAGCAGAGCCCGGACAACCC 160817 29 100.0 32 ............................. GTGACCACCACGAATCGGCCCAGGACGCCTAC 160756 29 96.6 32 ............................T CCAGAAGGTCGACCTCACCCTGAACAGCACCC 160695 29 100.0 33 ............................. GCGGCGGGGGTCCTGACCTGACACCACACAGCA 160633 29 100.0 32 ............................. CTCAGGATGCACGCCTGCGCCGCGCGGCGGTG 160572 29 100.0 32 ............................. TTCACGCCCGCGCCCGCCTCGGCGTCCCCGAA 160511 29 100.0 32 ............................. GTCACCGGCCCGCGCAGGGCAGGGTCGGTGGG 160450 29 100.0 32 ............................. GCGGTGGCCTCGGCCAGGGAGAGCAGCTTGGC 160389 29 96.6 32 ............................A TGGGCTGACACCTGGTTTGACGTGGGCGACAG 160328 29 100.0 32 ............................. CTGAAAGAGGACGATACCGACGAACTCGGCGG 160267 29 100.0 32 ............................. ACGCTTGCCTACCGGGGCAGCGTTTTTGTGCA 160206 29 100.0 32 ............................. CTCCCCGCCGATGTGGACACCGACAGCGAGAG 160145 29 100.0 32 ............................. CCCCTGGCGAGCCTCCAGAGTGACGCCTACAA 160084 29 100.0 32 ............................. GCAGCTTCATTGAGGCCAGCGACTTCCACGAG 160023 29 100.0 32 ............................. CCGTTCAGAGCGTGCTGAACGGCTTCGGAGTA 159962 29 100.0 32 ............................. TCCCAGGCCGGTAGCAGAGAGCCAGACGGTAA 159901 29 100.0 39 ............................. TCGGACTGGTCGAGTTTGCCGACGACGCGGAGCGGACGC 159833 29 100.0 32 ............................. GCGGGATCCAGCCGCGCGGCAAGCGCGTCTTC 159772 29 100.0 32 ............................. ACGGGCAAGAAAGGGCTGCCACTCAAGCAGTC 159711 29 100.0 32 ............................. CGCACCGACGACCAAGACGCCGCCGAGTGGCG 159650 29 96.6 32 ..........T.................. GGTCAGAGGTGGCGTTCCGAGCAAACTTCTCA 159589 28 79.3 0 .............C..CA..CG...-... | ========== ====== ====== ====== ============================= ======================================= ================== 36 29 99.0 32 GTTTTCCCCACGGGTGTGGGGATGGTCCG # Left flank : ACCTGCTGCACCTGCTGGGCGGCGACGACCCCGACCCTGAGCCGATGGCCCCCGGCGACCTGTGGGACCCGGAGGGCAACGCGGCGGGAGGAGTGAACCATGCTGGTCATGACTCTTGAGGCCGTCCCCGAGAGCCTGCGCGGTGAGCTTTCGCGCTGGCTGATCGAAGTCCAGCCCGGGGTGTACGTGGGCAACGCCTCGGCCCTCGTGCGCGACCTGCTGTGGGACAAGGCCGTGGGGCATACCCGCCGGGGCCGCTGCACCCAGGTCTACCGTGCCAGCAATGAGCAGGGCTTCGTCATCCGCACCCACGGCGACGCGACCCGGCGGGTGGTCAGCCTCGACGGATACCAGCTCGTTGCCGTCCGCAACGCGCGTCATGCAGAATTGGCCCAGGAGTACGACCCTCCAGAGGACGATGACAAATTGTGATGTGAATTGGGGAGGGGGCAGGGGCCTTCTCCGGGGATGAGGAGCGGAAAGGGCCGCGTTTCTAAAGT # Right flank : AACCTCAGTGCGCTTTTGCCCCGCGCCCCGGCCGCAGGTGCAGCACCGCCACGATCACGGCGCCCACCAGCAGCCCGAACAGGCCCGATCCCAGCGTCTCGACCAGCCACTCGACGAAGCCTTGCGCGAAGGGGACCGCGTGCCCCGCCGCCACGGCGAGACCGTGGAAGAAGTGGAGGGGGCCGCCCAGGCCGAAATCCTCCAGCCCCGCGAGGATGATGTGCCCGCCCACCCACAGCATGGCGGCGGTGCCGATCACCGAGAGGGCCGAGAGCACCTTGGGCATGCCGCGCACCAGCCCACGCCCGAAGGTGCGCCCCGCGCCCGACGCGCCGTTCGCCAGCCGCAGGCCGAAGTCGTCCATTTTCACGATGAGTCCCACGACCCCGTACACCAGCGCGGTGATCAGCAGTGCCACGACCACCAGGGTCGCCGCCCGCAGCCAGAAGGTCTGGTCGGCCACCTCCGCGAGCGAGATCGCCATGATCTCGGCCGAGAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCACGGGTGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 174580-174727 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026518.1 Deinococcus sp. NW-56 plasmid unnamed2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 174580 26 100.0 35 .......................... CCCGCCCCGCGCTTTATCGTCCATGAGCGGTGGTG 174641 26 100.0 35 .......................... TGGGGCGAGGAGATCATGCCCACGCTGCGGGCGTG 174702 26 96.2 0 .........................C | ========== ====== ====== ====== ========================== =================================== ================== 3 26 98.7 36 TTCCCCACGGGTGTGGGGATGGTCCG # Left flank : TGGCCGGGGGCGTGGCCGACTGGGCGCAGGTGCCCCCGGCCAGCGGGGCAAGGACGAGCAGGGCAGAGAGAACAAGGCGCAGAGCACGCATGGGCGGGCCTCCTGGGACAACAGGCCTCCCCCTCAGGCACCCTCTGGGGGTCCTGACTGTGGTGGGCGGAGGCGGGGCTAGGGCACGCGGCCAGGCGTGCCGGGCGGGTCGCCGCCTGCGGTGCGCTCCGGGGCGCTCCTCGCGGTGACGCCGCGCACTGTGGGCCAGCTCAGCGACGAAACCGGTCGCCGCGTAGTGGCCTGTTGTCCGGGGCCTCCTTTGCCCACTTGGTGGTGGCTTTTCGCGCCCGCTTCCGCCCGCTCAGGAGCAGCCCTGCGGTCAGCGGAAGCACCCTAGACTGGAAAGGGGTCTCCCTGGGCCACATGACAATGTGAGCCGGACCCGACCTCTGGCGTGGGGGTCGGGTCCGGCTGGCGGGGCTGGAGGCCGCGCCGATGTGGCGCTGGGT # Right flank : CTCCCTACTCCTACCTGTCCGCCACCGAGTTGTTGCGGCGCTCGTCGGCCTGGCGGCGCTGGCTGGCGAGATGCAGCAGGGCACGGGCCGAGCGGGCGTCGCGTGGCCACAGCGCGGTGCCGACGCTGACGCCGGGCAGTTCGAACCCGGCGTCCCGTGCGGCGCTCAGGGCGCGGGCGGGGGCCTCGCGGGCCTGGCGCTCGGCAGCTCCCCGCTCGCCTTCCGGGGGGGCCGACAGCAGCAGGGCGAACTGCACGCCGTCGAGTCGGTAGGCCCGGTCCCCGTCGCTCAGGCTGCTGCCCAGTGCTGCGGCGCACCGCGCCAGCAGCAGGTCACCCTCCACATGCCCCAACGCTCCATTCAAGGCAGCAAAGTCGGTAAAGGCGCACCGCACCAGCGCGAACGGCTCTCCCCCGGCCACCCGCGCGTCAAGGTCGCGCTCAAAGGCGCGGCGGCCCGGCAGTCCCGTGAGGGCGTCGAAGGTGGCTTCATGTTGGGCG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCCCACGGGTGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //