Array 1 88061-89065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCMX010000013.1 Escherichia coli strain EH4-18-18 NODE_11_length_105910_cov_188.994765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 88061 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 88122 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 88183 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 88244 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 88305 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 88366 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 88427 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 88488 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 88549 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 88610 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 88671 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 88732 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 88793 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 88854 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 88915 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 88976 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 89037 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8006-9010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCMX010000069.1 Escherichia coli strain EH4-18-18 NODE_56_length_26368_cov_185.119585, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8006 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 8067 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 8128 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 8189 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 8250 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 8311 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 8372 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 8433 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 8494 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 8555 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 8616 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 8677 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 8738 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 8799 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 8860 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 8921 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 8982 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //