Array 1 18561-17009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACR010000023.1 Streptococcus dysgalactiae strain iSDSE305 NODE_23_length_32698_cov_50.0821, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 18560 32 100.0 35 ................................ TGCGTTGTTATCGTCTTGATCATTGTATCCGTCTA 18493 32 100.0 34 ................................ CAATTTTGTAGCATTTAGTACGACTTAGCTCCCG 18427 32 100.0 33 ................................ TTTCTCTCTATAGATATTAGATATTGATATAGA 18362 32 100.0 32 ................................ TAGACGAAATGTCTGAAAAGGATAGACCAGAT 18298 32 100.0 35 ................................ ATGAAACAGCTAGGTGCTAGCGAAGATAGGGCTAG 18231 32 100.0 33 ................................ ATTTTGTTTTACCTCTTTTGTTTTATCTTTATG 18166 32 100.0 34 ................................ ACGAATGTATTGGCAGGTTTATCACTAGGAGATG 18100 32 100.0 36 ................................ AAGCAAAAGTAAACGAGATGCTTAAACAGCCACAAG 18032 32 100.0 35 ................................ CAATCACGGTTCATGTTCCAAACAGGCTTTGCACG 17965 32 100.0 35 ................................ TGAGATTGTCTAAGTCTAATGCCAAATCAGGATAG 17898 32 100.0 35 ................................ GATTTTTCCATCTACGATTGCTTTTTCCATTTCGA 17831 32 100.0 34 ................................ ATTCGGCAACGCATAATCAAAAATCTGTCCGTTT 17765 32 100.0 33 ................................ TAATTCACTTGGTCGGCAAGTCTTGAACCCAGC 17700 32 100.0 35 ................................ ATGTTAATCGTAAACACATCCAAGTTGGGACTTTT 17633 32 100.0 34 ................................ AACGCTTTTACAGGGTATGCAGTCGATGACTGAT 17567 32 100.0 33 ................................ ATGTCGGAACTATTACAGAATCACCTCGTCCAA 17502 32 100.0 34 ................................ TTATTGATTGCATATTGCCTCACGCTCTCCTCGT 17436 32 100.0 34 ................................ TATGTAGAGATGACAGCGAAGAACAACCGAAGTC 17370 32 100.0 34 ................................ TTTTGTTTTAGCTTTAAACGATGATGCCGCCTCC 17304 32 100.0 35 ................................ ATCTTGCGTCCAATTTTTTCGCATCTATACACTTC 17237 32 100.0 33 ................................ GCTTGTGTGCCGACGAAAATTTAACATCAATAG 17172 32 100.0 34 ................................ GATGAACATCAATTGCTTGAAAATATCGATGATT 17106 32 100.0 34 ................................ GTTCTGATTTTGGCATGTCCGTCAAGGATGTCAT 17040 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 24 32 99.6 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : CTAAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGAATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGATGCGTTTGGCTGGCAATGGCGAGGTTGTGGCGGTATCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCACGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26395-25435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAACR010000009.1 Streptococcus dysgalactiae strain iSDSE305 NODE_9_length_64137_cov_48.9735, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26394 36 100.0 30 .................................... GACGTTTGATAGGAGATGGTTTAAATGCAT 26328 36 100.0 30 .................................... AAAGAAATTCGCAAAGATTTTGATTGGGCT 26262 36 100.0 30 .................................... GCTTAGCAACTATTTTATCGTCGACTTCAA 26196 36 100.0 30 .................................... CATCAGAGATGGGATTAACCGTAATAATAA 26130 36 100.0 30 .................................... TCGCTTGTATTCTTCAATATCAATATCCTC 26064 36 100.0 30 .................................... TTGACTGTGATGGAGACTACGAGAGAGCCA 25998 36 100.0 30 .................................... AGCAATTGATAGCCAGTTTAGTCAAGTTTT 25932 36 100.0 30 .................................... ATACTAACAATTCCGTAATCGGCACCTAAT 25866 36 100.0 30 .................................... TCGTAAGCTCCACTCCATCTGCTAAAGCGT 25800 36 100.0 30 .................................... ACACTTTTGCGGGAAGTGGAACAACTCTCA 25734 36 100.0 30 .................................... AAAGTTAAAGCGGTCGATGTCAGTGCCGTA 25668 36 100.0 30 .................................... TTATGCACCTTTGATGCGAGACATCAGAGC 25602 36 100.0 30 .................................... TCAATTTATTGATGCTGATGAAGACACAAA 25536 36 100.0 30 .................................... TTGCTCTTATCTTTTATCCGTTTTTAGATA 25470 36 94.4 0 .................................TT. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.6 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : AATATCGTCAATATGACTTGAGAGAGGGATAAATACAATATCCTTATGCCTTCCCATTCTTTCTATTAAAACGTTTTCATGTTATAATAGTCAAAAGGAGAAGGAGGGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCGGATGGGGTTGAGCGAGGGTTAGTTGGAGAGGTTTTGCGGCGGATTGAGCGTCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGTCCGGAACTCTTGGCTAAGCACTACGAAGCCTTGGTAACTAAACCATTTTATCCTGAGCTTGAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGGTGCTGTCGGGAAATCGGGTGATTTCCTCTTGGCGAACCATGATGGGGGTAACTAATCCTAAGGATGCTCTTCCCGGGACCATTCGTGGTGATTTTGCCCAAGCTCCTGGTGATGATGGAGGTATTTTTAACGTGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //