Array 1 58966-57281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDYE01000001.1 Corynebacterium renale strain CIP 52.96 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 58965 29 72.4 122 C.CA....G..T.CT..C........... TTGTTAAGTTGGGGCAATTATTTTTCCCTGCACCTGCAGGGACGGACGTAAGCCCCTATTTTCATTCGATCAAGTCGTATGTAAAATAGGCAATCGGCTGATAAAACTCCTGTTCAAGGAGT 58814 29 96.6 32 ............................G TACCGCCGAATTATAAGAAGCGCACCCCGGTT 58753 29 96.6 32 ............................A ATAAGGGGAATGACACGCTCGCGGGCAAGCTG 58692 29 100.0 32 ............................. TTTCCCATTTACGTCAATTGCATGTGTCATGT 58631 29 100.0 32 ............................. TTACCGCCGCGGGAAAAGCGCGCGCGACCATA 58570 29 100.0 32 ............................. ATTCGGCGAAGAAATCACTTTCGAGACCGCCT 58509 29 100.0 32 ............................. GAACGCGGGATAACGTGGTCTGCGGTTGTCGC 58448 29 100.0 32 ............................. TTGCATGAGCTGGACGCAAATTGTCGAGGGAA 58387 29 96.6 32 ............................G TTCCCCCTACCGGTCGTTGCTGAAAGTCCTGA 58326 29 96.6 31 ............................G AAATGGGCGGCAGAATATCGTTCAGGGCTTG 58266 29 96.6 32 ............................T CCCACGGCACGGCCAGGTGCTCAGCATTGACA 58205 29 96.6 32 ............................G TGTAAATCGAGGAGTAGGAAAGAAACACCCGA 58144 29 100.0 32 ............................. AGGCTTGCGTCTGTGAGTGCCCAAGCCCGTGC 58083 29 100.0 32 ............................. GTGAAAGTGGTGCAAAGACAGCTGGGGCATTC 58022 29 100.0 32 ............................. CAGGAAAAACGGCACCTTCACCGACACCATCA 57961 29 100.0 32 ............................. TCTGCGCAGGTCAGGTAAATTTCAAATCATGA 57900 29 100.0 32 ............................. CGCCCGGCGCGTACGTCAGCATCCGAACCATC 57839 29 93.1 32 ............CA............... TCCACCCCACCGGCACCCCAGTCGAGGCACCA 57778 29 89.7 32 ............CA..............G TTGGCGCCGCGTTTGCCGGGCACGATCTCGAA 57717 29 89.7 32 ............CA..............G AAACTAAGCTCTTTTTCCGACCAACCACTGCT 57656 29 93.1 32 ............CA............... TTTACCGCGCGATTAACTCCATCATTCCACCT 57595 29 89.7 33 ............CA..............G TTTGCGGTTGGTCTGCGTGTGTCGTGGGAGATG 57533 29 93.1 32 ............CA............... CGCGCACTGTCTGACATGAAGCTACGCGGGTG 57472 29 89.7 32 ............CA..............G GTTAAAAGGGAACCCCCGGCTGTGTATGAAGC 57411 29 86.2 73 ............CAT.............G GGGCGGGTCACTGTCCTAGAGGTCACACACGGGTGTTCCCCGCACCGTTCAGCAACCGCCATACAAGGGCCTA 57309 29 89.7 0 ............CAT.............. | ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 26 29 94.8 37 GTGTTCCCCGCATGCGCGGGGATGAGCCC # Left flank : CCGCATTTACGATATGCGGATAAGTCATCTCAATCTGTGATTGGAAAGTCATGGTTGCTTTCCCGCAATCATGTACGCCAGCCAGCCATAGGTAAAGAGTGCGCAGTTCTTCGACTTCAATCCCCAGCTCTTTAGCCAACTGACGTTTCACGTTTGCCGCTAACCACACGTCAAACACCGCAGCAGCAGCGCAAGCTGCATCAACTAGATGCTGCGTTAATGAAAGATACCCAGATTCATCGCCTGACTTGGCCCACAAAGAATTGGCCATGGGGCTGCGCCGAGAAACCCACCCATCGAACAGGCGTGCCACATCAAGGACACTTTTCGGAAGTTCATGTCCGACACTCATGATTAGCTTTCTTTTAGATGTTTTCTTCGATGGTTTTGAATCTATCCTGAAAAGTAAAACATGTCAATACCCAATACCCAACTTAACAAGTTTTATTGTGTAAATCTGACGCTCTTAGAGCATTACGGAGCAGGGCTATAGAATGTGG # Right flank : AACATTCACGCTGGCCACGGGGTTGCTGACTGGCGTTCCCCGCGCATGCAGGGATAGATAATTCTCCAGTTACTATGTCGGAACTCTGAACGCTTCTGATGTCTACAGTTTCACGCCCAGCTTCCGCACCACCACGAAATTAATCCCTGACACTCTCCCCCACCGCGGGCCATAATGGTCCCCATGACTCTTTATGATGACACCCTCGCCCTTTTGCAGCAGTTGATCCGCAACGCGTGCGTCAATGACCTCACCGCCGATTCTGGTCATGAGGTCCGTAACGCAGATACGTTGGAGGAGTTTTTCGCCGCGGAGATCGCGGCCGGTTCGGTGAAGGTGCAGCGTTTTGAGCCGCATCCGGGTCGTCGTTCGGTGGCGTTTACGGTGCCCGGCGCGGACGAAACCGCTGAACCGCTTACTCTTTTGGGACATATTGATGTGGTGCCCGTCGATAAGCCGAAGTGGACCACGGATCCTTTCGGGGCGGAGATTATTGATGG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.40, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATGCGCGGGGATGAGCCC # Alternate repeat : GTGTTCCCCGCACACGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //