Array 1 1-354 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIO01000032.1 Corynebacterium striatum strain 2308 Contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1 30 100.0 32 .............................. ACCTAATCAGCACATAAACCGCGGTGAGCTTA 63 30 100.0 39 .............................. TCATCCATCTGGTCGCGGTAGTGCTTCACCCGTAGCCGA 132 30 100.0 41 .............................. TGGTGCCGTAGTCGATACCCAGTGCGATGATCTCTAAGTTC 203 30 100.0 31 .............................. ATTTGATACGAACTAGATGTCACCGTGTCAT 264 30 96.7 31 G............................. TTCAGGCCCGCGTGCGCGGCGACATTATCGC 325 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== ========================================= ================== 6 30 98.9 35 TGGAAATACCTCCGCGTGCGCGGAGAAGAG # Left flank : | # Right flank : TGCTAGGGCATGCAAAGCTTGATACCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGAAATACCTCCGCGTGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 4265-697 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIO01000005.1 Corynebacterium striatum strain 2308 Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4264 29 100.0 32 ............................. TTGCTAGTGTCTGGCTCGAAATACTTATTCGA 4203 29 100.0 32 ............................. AAGCAAAAGAGTTGAGAAAGTCAGCTTTCCTA 4142 29 100.0 32 ............................. TAGGAGACATAAATGTCTGTCGCAAGTTTTGT 4081 29 100.0 32 ............................. CAGCCACAGGAGTCATACAGGCCGGGGTGTGG 4020 29 100.0 32 ............................. TAGCAGGCAAGCAATTCTTCGATACGGATAAA 3959 29 100.0 32 ............................. ACTACTTGTCTGCGGAGCACGACCCGGCAAGT 3898 29 100.0 32 ............................. CTGGCTGGACACCCAATTAACCGCTAGTGACC 3837 29 96.6 32 ............................A CAGGGCGGAAGAGCAGGGGCTGAAACTCGTCA 3776 29 100.0 32 ............................. TTATGGGCATGCTGCAAACGTTACAGGAATCG 3715 29 100.0 32 ............................. CGTGGCCGGTGGTAATGCTTTCACTAGCGCCC 3654 29 100.0 32 ............................. TTTACGGGCATAAATCGTACCTGCGCGATAAT 3593 29 100.0 32 ............................. AGAACTTAGAGATTCTGCCCGCGGATTCTGGA 3532 29 100.0 32 ............................. CCCTACTACAAGGAAGCACACCGCGTGTTTAC 3471 29 100.0 32 ............................. CTGACGCCGGACTCCGCGCCTCGCCAGGATAA 3410 29 100.0 32 ............................. ACAATTAGTACATCATGTGCCCTAGTGGGAGA 3349 29 100.0 32 ............................. CTAGCCGCCTATCTGCACAATCAGGGCGTGTG 3288 29 100.0 32 ............................. CCTGGTTCATTCTTATATTTAGGAGACTCACA 3227 29 100.0 32 ............................. CAGATGGAGCTGGCGTTACAGAAGAAGCTGCG 3166 29 100.0 32 ............................. TACGACGCATCACTCACCCTCACCGAAATCAC 3105 29 100.0 32 ............................. GCGGCGCGGCCTGCCAGTGAGAAGTGATAGCC 3044 29 100.0 32 ............................. CATTGTGGTATCAAGCTTTGCATGCCCTAGCA 2983 29 100.0 32 ............................. GGCGATAATGTCGCCGCGCACGCGGGCCTGAA 2922 29 100.0 32 ............................. CATGACACGGCCACCCCTAGGTGGATAGGTCC 2861 29 100.0 32 ............................. TATTCCTCTTCCCTCATGGGTGGTCCCACACG 2800 29 100.0 32 ............................. CACAGCCCTCACTCATCGCCCACGAACTCGGC 2739 29 100.0 32 ............................. GTATTTGTTTGCCATGATTTCTCCATTCTTGC 2678 29 100.0 32 ............................. CTCTCTGGAAAGCCCGAGCCTGTGCTCACCGA 2617 29 100.0 32 ............................. TACAGCTGGCGAATCCGCTAGCGCAGCTGCTG 2556 29 100.0 32 ............................. GTGTCCTGTTCATGACCTCCGGCGTGGCCAAT 2495 29 100.0 32 ............................. TTCACGGTCTACATAGGCCTTATTTGCCAGTT 2434 29 100.0 32 ............................. GATTTACTTTTCTACGGGTGGTCGCTTTGGGG 2373 29 100.0 32 ............................. CCTTCTGATGCTCACCGAACCTGAAGACACCT 2312 29 100.0 33 ............................. AATCATTGCATTGCTGGTAAACATCCTTGTGCA 2250 29 100.0 32 ............................. GAGTTCATGCCGTGGGCTGCATACCCGACGGG 2189 29 100.0 32 ............................. TATCACGGTCAGGGCCTCGCGGTGGACTTTTC 2128 29 96.6 32 ............................T AACTATGCCTAAGACCCTCGCAGACATGACCC 2067 29 100.0 32 ............................. TAACACAATCGAAGTACCCATCTCGCTAATCA 2006 29 100.0 32 ............................. ATGACCGCACCTGCACAGGAACCCATGCTCGA 1945 29 100.0 32 ............................. TATCAAGCCCGTGGACGGAGTACGCATTTCCC 1884 29 100.0 32 ............................. GCCGCCTCACGAGTGACATCGTTCGTATCAAA 1823 29 100.0 32 ............................. ATTTACAACGCGTCCAACCGACTACTACGCCA 1762 29 100.0 32 ............................. TGGACCCACTAGCCGATTTGGCAGAAACCCTG 1701 29 100.0 32 ............................. TTTCGCCGAGCGAGTTTGCCCGCGCCTACGGG 1640 29 100.0 32 ............................. ACCTTCATAAAGGTGCATTCCGGGGTGCCCGG 1579 29 100.0 32 ............................. TATTCGTATCGTCGCGCTGTAAGAACCTTATC 1518 29 100.0 32 ............................. CATCATCGCACTGGGTATCGACTACGGCACCA 1457 29 100.0 32 ............................. ATCGGCCGGGTGAAGCTGTATCGCGACCACTC 1396 29 100.0 32 ............................. ATCGCCCGCACCTACCTTGACCAGATGGATGA 1335 29 100.0 32 ............................. ATAAGCCACCGCGGTTTATGTGCTGATTAGGT 1274 29 100.0 32 ............................. ACCCCAATGTCGGCGCACGAAACGACGGAGCG 1213 29 100.0 32 ............................. TTGGCGCGCCTCGTCTCAGGGGCTACTAGCCC 1152 29 100.0 32 ............................. ACCCGTGCGCCGAAACCGCCACGGCGGGCAAG 1091 29 100.0 32 ............................. GCGGTACGCACCGCCGTATCCAAGGTGGACGG 1030 29 100.0 32 ............................. AAGGTTCAGGCCGCCGGTGATTTCCAAGGCCC 969 29 100.0 32 ............................. TTCGCCAACTGCGGCGCGGCCTTAGCCAAAGA 908 29 100.0 32 ............................. GGTTAAACGCCCGCGAGCTTTGCCTCGTCCTG 847 29 100.0 32 ............................. AGGGGGCCAGGGCGCCGCGCCGTGGTGAGCTA 786 29 100.0 32 ............................. TAAGCCTCACCTAACTCAGTGCTACCGCCTCC 725 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 59 29 99.8 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : TAAGGAAGCAACTACGCCGGGAGATCCATCGGAAGAACTTACTCGTCGACATGCTGGAAGTTCTCACAGAGGTACTCACGCCCCACTTACCTTCACGTGATGACGATCGACTCGTCTCTGGGCGCGGCGATGAAGTCGCCGGACACACACAATATGGACGGCGCTGAATGTTTCTTGTAATCACAACCACCAGCCTCCCAGACCACATGCATGGCTACCTTTCGCGTTTCCTTTCGGAAGTAGATACCGGTGTTTATGTAGGAAACGTTTCCCGTCGCGTCCGCGATAACCTGTGGCGACGGCTTTCCAATGCCATCGCCGACGGCAGCCTAACCATGATCAACGAGGACCGGACCCGCGAACAGGGCTTTGCAGTCAACACTATGGGACCGCGACGCCGTACAATCATTGACATGGACGGCCTTTTACTTGCGTGCACGTTTTCGCGAGAACATACGCAAAACCGCACCGAGACAAACTAAAGTTGCTGTTCAGGAAGT # Right flank : TTTTAACGCTTCGCTTGGGTTCAGACCGTCGTTGCACCACTTCTAGTACGGAGGTGTTGTTATGGCACAGCGTCCGCAGGGCACTTTTGTGTCGTTATCGGAGTCGGATAAGGAGCAGTTGCGGCGGTTAATTGCCGGTGGCTTGAGTCTGCGCGCAGCGGTGCAAGAGGTTGGGTGTAATTATCAGCATGCGTATTTCTTTGCCCATTGTGAGCAGTTGATTCCATATAGTCCGCGTGGTCATGATGCTCAGGCTCTTGCGGCGGGCATCGAACTGGTGAGAAAGGGTGTGCGTGTGCATACCGCGGCGCGTCAGGTTGGTGTCTCTGATCCAGTTTTGCGCCGCCAGGCGTGCAAGCTAGGTTTGTGCGTGCCGGTCAGTCAGCTGCAACGGCGGATTAATGCCACCGAGCAACGTGTTATTTTCCTGCGTCTGCGACTAGCGAGCTTGTCGACTCGTGATGCTGCTGTAGCTTGTGGTATCAGTTTCCGTAAGGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2871-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIO01000038.1 Corynebacterium striatum strain 2308 Contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2870 29 100.0 32 ............................. CCAGACGCCGCGCCAGCGCGGGTGATAGTGCC 2809 29 100.0 32 ............................. GTCTGCGAATCCTGCGACCTCAGCCTTAGACC 2748 29 100.0 32 ............................. CAGACGTACCCAACAACAAGATCAAGTCCTCA 2687 29 96.6 32 ............................G AAAAAGCAGGCCGCTAACAGCGGGTTGACGAT 2626 29 100.0 32 ............................. TAGGGCGGTGATGAAGTATCCGATAGCGCCAG 2565 29 96.6 32 ............................T ATCAATAATCGAAGTGTAAACATCCCTCGCAG 2504 29 100.0 32 ............................. CACCACGCCCTGAGCACTAGTACGCACATCAC 2443 29 100.0 32 ............................. TCCGCTGAGGCGGTTGCTGGGGTCATGGACAA 2382 29 100.0 32 ............................. CTGCCTTTCGCAGCCTGCGGCTTAATCGCCGG 2321 29 100.0 32 ............................. AGGCCGCCGCCGTGCTCCGCGTCCACATCAAG 2260 29 96.6 32 ............................T AAGGTGCGGGGCTAGTGCCCGGTACAGCCCCC 2199 29 100.0 32 ............................. CCCCGGCGGATTCCTCCTCACCGTCGCCATCA 2138 29 100.0 32 ............................. GCCCCGACGCCCTGCCTTGGGTTGCCTAGCGC 2077 29 96.6 32 ............................G TCATGGGCGACAAGAAACGCCCCATGTGGCTT 2016 29 96.6 32 ............................T GCGCCCGATTCGCTGCCCCTCGGACACACGCT 1955 29 100.0 32 ............................. CTGATCCGTCCCATTCGGGCGCCCAGACGATG 1894 29 100.0 32 ............................. TCGTGGCTGTCCGGCTCGCCGGGGGCGATGCT 1833 29 100.0 32 ............................. AGCCGTGGTGGCTCCGCTACAAAGGCTCAATC 1772 29 100.0 32 ............................. TTGGAGGTATCCCCATCCATGGCATTCAACGC 1711 29 100.0 32 ............................. TCCTCAGCGGCTTCGCGGTAGCTGCTTGCCAG 1650 29 100.0 32 ............................. AGGGCGCGTAGTTGGTCTCGCGTGCCTCGGTA 1589 29 100.0 32 ............................. ACGCCCACCTCCCTACCGGTCTACACTGGCCC 1528 29 100.0 32 ............................. GGGGGCGTGGCGCCACATCTTCATTTTGAGCA 1467 29 100.0 32 ............................. GGTCGCACCTCGCCGGTGCCCGGTTCTTCCGT 1406 29 96.6 32 ............................T ATGGCGACAACTTCGAGGACCATCGGGTAACG 1345 29 96.6 32 ............................G GAAACGGGCGCCAATATTGACATGGGCAAGGT 1284 29 100.0 32 ............................. GACGTCGACGCATTCCTGGTCTGCGGAGCAGA 1223 29 100.0 32 ............................. TCCGCGGTACGCTGCGCCATAAGGCCACGCAC 1162 29 100.0 32 ............................. TCTAGGACGCCGGGCGGCTTCCTCCTCACCGT 1101 29 100.0 32 ............................. GACACTGAGCCGTCAGTCACCGGCACGCGGTC 1040 29 96.6 32 ............................G TTGTCGCCATATTTCCTGAATCGCGTCAATCT 979 29 100.0 32 ............................. AGCCGTGGTGGCTCCGCTACAAAGGCAGCATC 918 29 96.6 32 ............................T CGGAAGATTCAGGAGCGTGGTGAGTCTCAGGA 857 29 100.0 32 ............................. TGCGCGGCAAGTGCGCCCTTGCGGACCTCCTC 796 29 100.0 32 ............................. TCACTCGCCGCGACATCCTTACCATGGCGCTC 735 29 96.6 32 ............................T CTGAGGGAGCGCATTGACCAGCTCAAAAGTCG 674 29 96.6 32 ............................A TAAGCCACAAGCGGCGGGCCATATCCTAGGTA 613 29 96.6 32 ............................T CGCGCTCCCACGCCCGCAGCGCAGCACCAGGG 552 29 100.0 32 ............................. CATCGGAGATTCTTAACTTTCTCTCTGATACG 491 29 96.6 32 ............................T AAGGTCATGCCGAAAAAGGCGACCATTGATGA 430 29 96.6 32 ............................G CATTAACCACGCGGCTAGTACCGAAGATTCTT 369 29 100.0 32 ............................. CAGATGCGATAGTGGCGGTATTTACGATGCCG 308 29 100.0 32 ............................. CCGGAGGTACAGTAATGGCTAACGCATGGAAA 247 29 100.0 32 ............................. AAGCAGGGTGAACCAACGTTTAACGGTTGGTC 186 29 100.0 32 ............................. CCAGACGCCGCGCCAGCGCGGGTGATAGTGCC 125 29 100.0 32 ............................. AAAATCATCCGATTTACCGCCAACAATGGCAC 64 29 72.4 0 ...........T..C......CG..CGTG | ========== ====== ====== ====== ============================= ================================ ================== 47 29 98.4 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GGATGAGCCGGTGATATTGCTGATGTGGAGATTTGGGGCCG # Right flank : GCCATTGTTGGCGGTAAATCGGATGATTTTGGGCTC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2343-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIO01000041.1 Corynebacterium striatum strain 2308 Contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 2342 29 100.0 33 ............................. CCCCGCGTTTACCGGCATCGTTGTCATAACTTT 2280 29 100.0 32 ............................. CCGGCGACAGGGATGGGTATGGCCGGTACGGC 2219 29 100.0 32 ............................. GAGCGGCGCTGACATAAATTTTTGCCGTGTTA 2158 29 100.0 32 ............................. AGCAATGTGCAACTTTAGGGGTTGGCGTTCCC 2097 29 100.0 32 ............................. CTACCAACCGCGCTCCATCAGCTTCCCAGAGC 2036 29 100.0 32 ............................. CAAGCCCCGCCGCCGCAACAAGTACGAATCAT 1975 29 100.0 32 ............................. CACCGCACAGAACACCCTCGACCATGTGATCC 1914 29 100.0 32 ............................. GACCCGTTGTTAATATCCGCGACGGGGGTTGG 1853 29 100.0 32 ............................. TGGTTGCGAGGAATTCCATCTTGGAGCACTTC 1792 29 96.6 32 ............................G GGGAGGTGATCGCCGCTGACCGCGTGCCCTAC 1731 29 100.0 32 ............................. CACCTACGAACTCGTAGTCAGCGCCGTCAGCG 1670 29 100.0 32 ............................. CATGCTCGATGCCCGTATCCTCCGGCGCTCTT 1609 29 100.0 33 ............................. CCCCGCGTTTACCGGCATCGTTGTCATAACTTT 1547 29 100.0 32 ............................. CCGGCGACAGGGATGGGTATGGCCGGTACGGC 1486 29 100.0 32 ............................. GAGCGGCGCTGACATAAATTTTTGCCGTGTTA 1425 29 100.0 32 ............................. CATCCAGCGGTTAGATCGTGAAGTAGGGGAGC 1364 29 96.6 32 ............................G GATGGAGACCACAGATCTGCTTAGCTTCCTCA 1303 29 96.6 32 ............................T GGCGACACCGGCCCATCGGTGCGAGTAAGCCA 1242 29 100.0 32 ............................. GCACACTCACATCAGCACGCACAAACCGGCGA 1181 29 100.0 32 ............................. CCAGACCCCAGCACCAACGGCGGCGTGGCGCC 1120 29 100.0 32 ............................. TGGTTGCGAGGAATTCCATCTTGGAGCACTTC 1059 29 100.0 32 ............................. GTCTCATCTTCACCTTCCCAGGTGATATTCGC 998 29 96.6 32 ............................G GGCAGCCCTCCAACCAGGTTTCCGGATCAATA 937 29 100.0 32 ............................. GCCTACCGAGGCACGCGGGAGGAATTGCGTGC 876 29 100.0 32 ............................. ACCGCCGCCCACGCTACGCGATGAGGTGGCGA 815 29 100.0 32 ............................. ACGGGCCTGCAGCTCACCCTTCAGCGCTTCGG 754 29 100.0 32 ............................. CCGGCCATTCGTTCGCGGCCTTGGACTTCCAG 693 29 100.0 32 ............................. TTGGAACGCTCCGACGCCCTGCCGTGGGTTGC 632 29 100.0 32 ............................. CCCGGCTTGCTTAAGCACCGCGATAGCTTCGG 571 29 100.0 32 ............................. GAGTGAGATGGAAGTCGATTCGCTCACGTCCA 510 29 100.0 32 ............................. CGATAACCTCCTGCGCCCGATTCCACAAGTTC 449 29 100.0 33 ............................. CGGAGGAAGGGGATGATGACTACCACGACTGGG 387 29 100.0 36 ............................. CGCAGCGGCGCTGACATAGCAATTTTTGCCGTGTTA 322 29 100.0 32 ............................. AGCAATGTGCAACTTTAGGGGTTGGCGTTCCC 261 29 100.0 32 ............................. CTACCAACCGCGCTCCATCAGCTTCCCAGAGC 200 29 100.0 32 ............................. CAAGCCCCGCCGCCGCAACAAGTACGAATCAT 139 29 100.0 32 ............................. CACCGCACAGAACACCCTCGACCATGTGATCC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 38 29 99.6 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CGTATCCTCCGGCGCTCT # Right flank : CGACCCGTTGTTAATATCCGCGACGGGGGTTGGGTCCGCCCCGCGTAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1219-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIO01000049.1 Corynebacterium striatum strain 2308 Contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1218 29 100.0 32 ............................. CTACAGACCGAAGAACAGCTGGCCCTGCTCAT 1157 29 96.6 32 ............................T CGCCGTGATCAAGCATAGGAAGGGGAAGGATG 1096 29 100.0 32 ............................. GGTCGCACTTCGCCGGTGCCCGGTTCTTCTGG 1035 29 100.0 32 ............................. TTTCTCTCTGATACGAAAACCCCCGGCGGATT 974 29 96.6 32 ............................T ATGCCCAGACCACCATTTCTCGCCAGCTATCC 913 29 100.0 32 ............................. CCGGATGAAATCAGGGCGTTAGTTACCGCCTG 852 29 100.0 32 ............................. CTGTGCCGTGGTGTGCGTATGCGGAGCGGGTG 791 29 100.0 32 ............................. AAAAGAAGGAGGACAAAATGGCAACACTATTT 730 29 100.0 32 ............................. CACCCGCAAGGCCAAAATCAGTACCCCAGTGG 669 29 96.6 32 ............................G ACTCGGCAGGATTAGAGTCCAGGAGCCGAGCC 608 29 100.0 32 ............................. ACCCGTGGCGAACGCAATAAGCGTGATAGAGC 547 29 96.6 32 ............................T TCGCCGCGCCAGGTGAGGCGGCAAAGGAACTA 486 29 100.0 32 ............................. GAGTGTGACCAATGCCTAACGCTTTTATTTGT 425 29 100.0 32 ............................. GTGATTGTGCCTCCAATAGTCACAAATTTGGA 364 29 96.6 32 ............................T TGGCGCAGTGACGACCGCGCGCTCGACCTCGC 303 29 100.0 32 ............................. TGGTAGGACTGCGTCAGCTCGGTAGCTTCTTG 242 29 100.0 34 ............................. CCACTAGCGGCGCCAGCGCGGGTCCGATAGTGCC 179 29 100.0 32 ............................. GAGCGGCGCTGACATAAATACCAGCCGTGTTA 118 29 100.0 32 ............................. AGGCCGCCGCCGTGCTCCGCGTCCACATCAAG 57 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 20 29 99.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GCGTCGGCAGCGCCAGAGGTGTAGCCGCCCCAGAGGGCGCGGCTTCGCCCCCCGCCCGGGGCCCCCCGCCGCAATTTACCCCG # Right flank : TAAGGTGCGGGGCTAGTGCCCGGTACAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41-317 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIO01000051.1 Corynebacterium striatum strain 2308 Contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 41 29 100.0 36 ............................. ACAAAACTTGCGACAGACATTTATGAATGCTCCATA 106 29 100.0 32 ............................. TAGGAAAGCGACCACCCGTAGAAAAGTAAATC 167 29 100.0 32 ............................. AACTGGCAAATAAGGCCTATGTAGACCGTGAA 228 29 100.0 32 ............................. ATTGGCCACGCCGGAGGTCATGAACAGGACAC 289 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 100.0 33 GGAAATACCTCCGCGTGCGCGGAGAAGAG # Left flank : GAGAAGAGCCACACCCCGGCCTGTATGACTCCTGTGGCTGG # Right flank : CAGCAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAATACCTCCGCGTGCGCGGAGAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 94678-101845 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRIO01000011.1 Corynebacterium striatum strain 2308 Contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 94678 29 100.0 32 ............................. CATCCAGCGGTTAGATCGTGAAGTAGGGGAGC 94739 29 100.0 32 ............................. GGGAAAGTCGGTAATCATCGCGTAACTGATTA 94800 29 96.6 32 ............................A AGGACGGGGAACACAAGCTCAAATGGGCTTGG 94861 29 100.0 32 ............................. CTGCGCGGTCAGGGGCTTGTGGTTAGAGTTTT 94922 29 100.0 32 ............................. AAATCAAAGGATACATGATGGCATCCATCAAA 94983 29 96.6 32 ............................G GAACCCCAGGACCGGCACTTTGGTCAGATGGA 95044 29 100.0 32 ............................. TCGAAGTCACACAACACCTACTCCGAACTTGG 95105 29 100.0 32 ............................. GAGCGGCGCTGACATAAATTTTTGCCGTGTTA 95166 29 100.0 32 ............................. AGCAATGTGCAACTTTAGGGGTTGGCGTTCCC 95227 29 100.0 32 ............................. CTACCAACCGCGCTCCATCAGCTTCCCAGAGC 95288 29 100.0 32 ............................. CAAGCCCCGCCGCCGCAACAAGTACGAATCAT 95349 29 100.0 32 ............................. CACCGCACAGAACACCCTCGACCATGTGATCC 95410 29 100.0 32 ............................. GACCCGTTGTTAATATCCGCGACGGGGGTTGG 95471 29 100.0 32 ............................. TGGTTGCGAGGAATTCCATCTTGGAGCACTTC 95532 29 100.0 32 ............................. GTCTCATCTTCACCTTCCCAGGTGATATTCGC 95593 29 96.6 32 ............................G GGCAGCCCTCCAACCAGGTTTCCGGATCAATA 95654 29 100.0 32 ............................. GCCTACCGAGGCACGCGGGAGGAATTGCGTGC 95715 29 100.0 32 ............................. ACCGCCGCCCACGCTACGCGATGAGGTGGCGA 95776 29 100.0 32 ............................. ACGGGCCTGCAGCTCACCCTTCAGCGCTTCGG 95837 29 100.0 32 ............................. CCGGCCATTCGTTCGCGGCCTTGGACTTCCAG 95898 29 100.0 32 ............................. TTGGAACGCTCCGACGCCCTGCCGTGGGTTGC 95959 29 100.0 32 ............................. CCCGGCTTGCTTAAGCACCGCGATAGCTTCGG 96020 29 100.0 32 ............................. GAGTGAGATGGAAGTCGATTCGCTCACGTCCA 96081 29 100.0 32 ............................. CGATAACCTCCTGCGCCCGATTCCACAAGTTC 96142 29 100.0 32 ............................. CGGAGGAAGGGGATGATGACTACCACGACGGA 96203 29 100.0 32 ............................. CGCACCGGGGCACCCGCCGCAATTTACCCCGG 96264 29 100.0 32 ............................. CTACAGACCGAAGAACAGCTGGCCCTGCTCAT 96325 29 96.6 32 ............................T CGCCGTGATCAAGCATAGGAAGGGGAAGGATG 96386 29 100.0 32 ............................. GGTCGCACTTCGCCGGTGCCCGGTTCTTCTGG 96447 29 100.0 32 ............................. TTTCTCTCTGATACGAAAACCCCCGGCGGATT 96508 29 96.6 32 ............................T ATGCCCAGACCACCATTTCTCGCCAGCTATCC 96569 29 100.0 32 ............................. CCGGATGAAATCAGGGCGTTAGTTACCGCCTG 96630 29 100.0 32 ............................. CTGTGCCGTGGTGTGCGTATGCGGAGCGGGTG 96691 29 100.0 32 ............................. AAAAGAAGGAGGACAAAATGGCAACACTATTT 96752 29 100.0 32 ............................. CACCCGCAAGGCCAAAATCAGTACCCCAGTGG 96813 29 96.6 32 ............................G ACTCGGCAGGATTAGAGTCCAGGAGCCGAGCC 96874 29 100.0 32 ............................. ACCCGTGGCGAACGCAATAAGCGTGATAGAGC 96935 29 96.6 32 ............................T TCGCCGCGCCAGGTGAGGCGGCAAAGGAACTA 96996 29 100.0 32 ............................. GAGTGTGACCAATGCCTAACGCTTTTATTTGT 97057 29 100.0 32 ............................. GTGATTGTGCCTCCAATAGTCACAAATTTGGA 97118 29 96.6 32 ............................T TGGCGCAGTGACGACCGCGCGCTCGACCTCGC 97179 29 100.0 32 ............................. TGGTAGGACTGCGTCAGCTCGGTAGCTTCTTG 97240 29 100.0 32 ............................. CCACTAGCGGCGCCAGCGCGGGTGATAGTGCC 97301 29 100.0 32 ............................. GAGCGGCGCTGACATAAATACCAGCCGTGTTA 97362 29 100.0 32 ............................. CATCCAGCGGTTAGATCGTGAAGTAGGGGAGC 97423 29 96.6 32 ............................G GATGGAGACCACAGATCTGCTTAGCTTCCTCA 97484 29 96.6 32 ............................T GGCGACACCGGCCCATCGGTGCGAGTAAGCCA 97545 29 100.0 32 ............................. GCACACTCACATCAGCACGCACAAACCGGCGA 97606 29 100.0 32 ............................. CCAGACCCCAGCACCAACGGCGGCGTGGCGCC 97667 29 100.0 32 ............................. TGGTTGCGAGGAATTCCATCTTGGAGCACTTC 97728 29 96.6 32 ............................G GGGAGGTGATCGCCGCTGACCGCGTGCCCTAC 97789 29 100.0 32 ............................. CACCTACGAACTCGTAGTCAGCGCCGTCAGCG 97850 29 100.0 32 ............................. CATGCTCGATGCCCGTATCCTCCGGCGCTCTT 97911 29 100.0 33 ............................. CCCCGCGTTTACCGGCATCGTTGTCATAACTTT 97973 29 100.0 32 ............................. CCGGCGACAGGGATGGGTATGGCCGGTACGGC 98034 29 100.0 32 ............................. GAGCGGCGCTGACATAAATTTTTGCCGTGTTA 98095 29 100.0 32 ............................. ATGCCCAGCCAGAGATCTTCCATGGTGTTCTG 98156 29 96.6 32 ............................G GTGATATTGCTGATGTGGAGATTTGGGGCCGT 98217 29 100.0 32 ............................. CCAGACGCCGCGCCAGCGCGGGTGATAGTGCC 98278 29 100.0 32 ............................. AAAATCATCCGATTTACCGCCAACAATGGCAC 98339 29 100.0 32 ............................. TCATCCCATGCTTTGCGCACGATTGCTTCGTG 98400 29 100.0 32 ............................. ATTTAACCGATGGAGTCATCCCCGCAACCCAA 98461 29 100.0 32 ............................. ACTTGACCTTGGTACTGACATCCGAGAAGTTG 98522 29 100.0 32 ............................. ACTTCGCCCTGCTTATTCTTAGCCTTAGCAAA 98583 29 100.0 32 ............................. GGCGACGTAACCGCGAAACCCGCATTTACCGG 98644 29 100.0 32 ............................. ACGCCACCAGGGAACACCAACCCCTAAAGTTG 98705 29 100.0 32 ............................. ATTTTTGTCAGCTTTAGCACTAGCCTCGGAAA 98766 29 100.0 32 ............................. ACGCCCACCTCCCTACCGGTCTACACTGGCCC 98827 29 100.0 32 ............................. GGGGGCGTGGCGCCACATCTTCATTTTGAGCA 98888 29 100.0 32 ............................. GGTCGCACCTCGCCGGTGCCCGGTTCTTCCGT 98949 29 96.6 32 ............................T ATGGCGACAACTTCGAGGACCATCGGGTAACG 99010 29 96.6 32 ............................G GAAACGGGCGCCAATATTGACATGGGCAAGGT 99071 29 100.0 32 ............................. GACGTCGACGCATTCCTGGTCTGCGGAGCAGA 99132 29 100.0 32 ............................. TCCGCGGTACGCTGCGCCATAAGGCCACGCAC 99193 29 100.0 32 ............................. TCTAGGACGCCGGGCGGCTTCCTCCTCACCGT 99254 29 100.0 32 ............................. GACACTGAGCCGTCAGTCACCGGCACGCGGTC 99315 29 96.6 32 ............................G TTGTCGCCATATTTCCTGAATCGCGTCAATCT 99376 29 100.0 32 ............................. AGCCGTGGTGGCTCCGCTACAAAGGCAGCATC 99437 29 96.6 32 ............................T CGGAAGATTCAGGAGCGTGGTGAGTCTCAGGA 99498 29 100.0 32 ............................. TGCGCGGCAAGTGCGCCCTTGCGGACCTCCTC 99559 29 100.0 32 ............................. TCACTCGCCGCGACATCCTTACCATGGCGCTC 99620 29 96.6 32 ............................T CTGAGGGAGCGCATTGACCAGCTCAAAAGTCG 99681 29 96.6 32 ............................A TAAGCCACAAGCGGCGGGCCATATCCTAGGTA 99742 29 96.6 32 ............................T CGCGCTCCCACGCCCGCAGCGCAGCACCAGGG 99803 29 100.0 32 ............................. CATCGGAGATTCTTAACTTTCTCTCTGATACG 99864 29 96.6 32 ............................T AAGGTCATGCCGAAAAAGGCGACCATTGATGA 99925 29 96.6 32 ............................G CATTAACCACGCGGCTAGTACCGAAGATTCTT 99986 29 100.0 32 ............................. CAGATGCGATAGTGGCGGTATTTACGATGCCG 100047 29 100.0 32 ............................. CCGGAGGTACAGTAATGGCTAACGCATGGAAA 100108 29 100.0 32 ............................. AAGCAGGGTGAACCAACGTTTAACGGTTGGTC 100169 29 100.0 32 ............................. CCAGACGCCGCGCCAGCGCGGGTGATAGTGCC 100230 29 100.0 32 ............................. GTCTGCGAATCCTGCGACCTCAGCCTTAGACC 100291 29 100.0 32 ............................. CAGACGTACCCAACAACAAGATCAAGTCCTCA 100352 29 96.6 32 ............................G AAAAAGCAGGCCGCTAACAGCGGGTTGACGAT 100413 29 100.0 32 ............................. TAGGGCGGTGATGAAGTATCCGATAGCGCCAG 100474 29 96.6 32 ............................T ATCAATAATCGAAGTGTAAACATCCCTCGCAG 100535 29 100.0 32 ............................. CACCACGCCCTGAGCACTAGTACGCACATCAC 100596 29 100.0 32 ............................. TCCGCTGAGGCGGTTGCTGGGGTCATGGACAA 100657 29 100.0 32 ............................. CTGCCTTTCGCAGCCTGCGGCTTAATCGCCGG 100718 29 100.0 32 ............................. AGGCCGCCGCCGTGCTCCGCGTCCACATCAAG 100779 29 96.6 32 ............................T AAGGTGCGGGGCTAGTGCCCGGTACAGCCCCC 100840 29 100.0 32 ............................. CCCCGGCGGATTCCTCCTCACCGTCGCCATCA 100901 29 100.0 32 ............................. GCCCCGACGCCCTGCCTTGGGTTGCCTAGCGC 100962 29 96.6 32 ............................G TCATGGGCGACAAGAAACGCCCCATGTGGCTT 101023 29 96.6 32 ............................T GCGCCCGATTCGCTGCCCCTCGGACACACGCT 101084 29 100.0 32 ............................. CTGATCCGTCCCATTCGGGCGCCCAGACGATG 101145 29 100.0 32 ............................. TCGTGGCTGTCCGGCTCGCCGGGGGCGATGCT 101206 29 100.0 32 ............................. AGCCGTGGTGGCTCCGCTACAAAGGCTCAATC 101267 29 100.0 32 ............................. TTGGAGGTATCCCCATCCATGGCATTCAACGC 101328 29 100.0 32 ............................. TCCTCAGCGGCTTCGCGGTAGCTGCTTGCCAG 101389 29 100.0 32 ............................. AGGGCGCGTAGTTGGTCTCGCGTGCCTCGGTA 101450 29 100.0 32 ............................. ACGCCCACCTCCCTACCGGTCTACACTGGCCC 101511 29 100.0 32 ............................. GGCGGCCTTATCGATACTAAGGGTAAGACTCA 101572 29 100.0 32 ............................. ACGTCACGCGGCATAAAGCCTATTTCGTCCAA 101633 29 96.6 33 ............................G TGCACGGTTTGCCACGCGGCATGGGGCTAGTAG 101695 29 100.0 32 ............................. TTCCACCCGTAATAAGGTAGCGGGCTAGTCTC 101756 29 96.6 32 ............................G CCGGAGACCCGCGTAGCTGGCGTGCCGCCGCT 101817 29 93.1 0 ......................A....G. | ========== ====== ====== ====== ============================= ================================= ================== 118 29 99.1 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //