Array 1 317417-318437 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP039743.1 Staphylococcus pseudintermedius strain MAD627 chromosome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    317417	    36	 100.0	    30	....................................	GAATGCTTTGGAAAAGATAAAGGCGACGGC	
    317483	    36	 100.0	    30	....................................	TAAAAACATCGGTTTAGGTACGATGGTTGC	
    317549	    36	 100.0	    30	....................................	CAGAGAACATCACAACGAACAACATAATAT	
    317615	    36	 100.0	    29	....................................	TAAAATCAGAAACAAAAGGGCAAGCGGTT 	
    317680	    36	 100.0	    29	....................................	AAAGTTAGACAACTGGACTAAACAAGCAA 	
    317745	    36	 100.0	    29	....................................	CTAAATGCGTCTTGCTACTCACACCACTG 	
    317810	    36	 100.0	    29	....................................	AGTGGTTTTGCTTCCTTAGCAAGGAAATC 	
    317875	    36	 100.0	    30	....................................	CATCATATTTACGTTTTTGCTCATCTTGAA	
    317941	    36	 100.0	    30	....................................	TTGGTTTTCGGACAGTTTAGTGTCTGTGAC	
    318007	    36	 100.0	    29	....................................	TACTTTAATCTGGAAAGACGGGGAGATGG 	
    318072	    36	 100.0	    30	....................................	TTTAACTAAAACTGGTTATACGACTGAGCG	
    318138	    36	 100.0	    29	....................................	AGCAAAACGGTTCAAACGTTGGGTAACGT 	
    318203	    36	  97.2	    30	............................A.......	AATGCACGTGCTGTTATGGTGAAAGGCTAT	
    318269	    36	  94.4	    30	...........T................A.......	CGAAAGTAAAGATAGTATGCAAGGTGCAAG	
    318335	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
    318401	    35	  83.3	     0	T........T................-.CA.C....	|                             	TC [318433]
==========	======	======	======	====================================	==============================	==================
        16	    36	  98.3	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.20,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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