Array 1 9185-8738 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVT01000017.1 Pseudomonas cichorii strain Ku1409-10-1 sequence17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9184 28 100.0 32 ............................ AGCCCGGCGTCTTTGGACTGGTGCTTCTTCAG 9124 28 100.0 32 ............................ TTCAATTGTGACCACCTGGATAAACTTGCGGC 9064 28 100.0 32 ............................ ACTCCAACCTTGATCGCCAAGGCCCGCTGAGT 9004 28 100.0 32 ............................ AAGAGCAATTCACTTCGATCCGGACCCTGACG 8944 28 100.0 32 ............................ ACACCACCCGTATGGGCCTGCAACCTTTTGGC 8884 28 100.0 32 ............................ TGCAGGCCGAGGATCTGCTGCCGGCTCAGGGC 8824 28 96.4 32 ..................C......... ATCTTCAAAGTCCATGCCGTAGGCGCAGTTGG 8764 27 92.9 0 .....................-..A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGTTGGTCAGAGCATCAACCGCTTAAATGATGGGTTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGCTGAGAGAACCGAGGGAGGAGCGGATTTATCCGCGAGACGGCATTGAAGGCAATGCATTTTGTACGACGAAAGGCTCATCCCGCACAACCTTGTGGGGGAGGGGCCTTGGCCGCGACAGCTTCACACGGAATATGTCAGGAAATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGTACGACATCAGAAAGCATGTCGATGCCCCACAGCTTGCGAATATCTATCCAGCGGCCAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCTCGATAAAAAAAGGGGTAAAACGGCTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AACCAAAGCCCTTGTAGCCACACCTCACCGACAAGGGCTTCAGTCCATCGCCAACAGAACATCAGAACCAGGGAACAGTAGCCGTAGCACTCAACCCATAGCTATTGAAGGTCCCTTCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAAGGTCTGGCCACTGGTACGGCTGCGCATCTGGACAAAGGGCAGGTTGCAGCGTTTTGCAGCGCTGTCGGGGATGCGTTCGCGGGCCTGTTCTTCCGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACTTGCACGCGGTTGACGCGCCGATGTTGCGCATCAGTGGGCACCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGAGCATCCAGCGCTTGTGCACTGCCATGCAGGCGCAGGCGGTCGCCCAGGCCCTTAGTCTTGCCTATAGCCGGGAAGCTGATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 655-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVT01000007.1 Pseudomonas cichorii strain Ku1409-10-1 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 654 28 100.0 32 ............................ CCCGCTCCCCCATGCTCGGCGCTCGCCAGTGC 594 28 100.0 32 ............................ AGCAGGTCGGGCTCAGCCAAAGGAATAGTCCC 534 28 100.0 32 ............................ CCCTTCACCGCTGAAGGTATAAAAGGCATTCA 474 28 100.0 32 ............................ AAAAAAGCTGCGGGCCGGGTTTTCGTCGCTGC 414 28 100.0 33 ............................ GAAGAAGCTGTCAGCCCAGGATCCTGCGAACAC 353 28 100.0 32 ............................ ATGGTGAAGCTCACCATGACCAAGGCTGGATT 293 28 100.0 32 ............................ ATGCAAGCTACTGAACAGAATCCACCGCTGAA 233 28 100.0 32 ............................ AGGGTCGAGCAACAGCACAGTTACCGGCGTCA 173 28 100.0 32 ............................ TCAACGAAGAAAGCTCGAATGCGGCGCGTAAG 113 28 100.0 32 ............................ AGAAGACGGAGCGTACAAAGACAAAATTCTGT 53 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CCAAGTTTCAGGTCGGCGTGATCTTGGCCGTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTAGATAACCTTTCGTTTTCAAAGAAAAATCCTCACCAGTAGCCGTTTTACCCCTTTTTTTACCGAGCTTTATAAGTCATTGATTTTTAATGAATGAATCTGAGGTGAAAAAAAGAGGGTCAAGAAAGGGGTCATTCCTGGCCCACTTCTATATGGGCAATGTCGCGGCCAAGGCCCCTCCCGCAAGGTGAACTGCCTTCGATACCGTGTCGGACTACTCCCGTAGGAGGGGGCTTGCCCGCGACAAGACACACAGCAGGTAATACTGATTCTCACAGGGCAGCCCCATTGCCGATCCTGACCCTCTTTTTTTCACCCACCATGCACCCTTTTAAAATCAACCACTTACAGAACCGACGAAAAAGAGGGGTTGAACGACCGCAAGCGCATATTTTTCTTTGAAAACGAAAGGTTATCCAGCAAAGTGTCTA # Right flank : AATGTCGCCATCTTCCCAGTCGTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1097-1785 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVT01000007.1 Pseudomonas cichorii strain Ku1409-10-1 sequence07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1097 28 100.0 33 ............................ CGGCCAAGATCACGCCGACCTGAAACTTGGGAA 1158 28 100.0 32 ............................ TTTTCCAGCTTCACTTTCTCGCGGGCACGCAT 1218 28 100.0 32 ............................ AACCATCGGCGGCATCCTGAACAGTCTGCTGG 1278 28 100.0 32 ............................ TACATAGACGTGCTCTTTTGCGAACTCTGGAA 1338 28 100.0 32 ............................ AGCGGCGAAGTGAAACAGTCGCGCCGCCCGGA 1398 28 100.0 32 ............................ GTCTGGTAGTTGCTGGCCTGCAGCGCTTTTAC 1458 28 100.0 32 ............................ TGCCCTGGGGCGATTTATCCCGGGTCTTTACA 1518 28 100.0 32 ............................ GTTGTGCCGAGCGGCGGCAACCAGTTCGATAT 1578 28 100.0 32 ............................ TATGGTGGCGGCTTCGTAACCGGCATCACCCG 1638 28 100.0 32 ............................ TCAGAAGGCTGGACAATTGATAAAATAGCGGA 1698 28 100.0 32 ............................ AACGGGGATAACGTTGATGCGCTCCAGGAAGT 1758 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : ACTGGCGAGCGCCGAGCATGGGGGAGCGGGTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTGGATAACCTTTCGTTTTCAAAGAAAAATATGCGCTTGCGGTCGTTCAACCCCTCTTTTTCGTCGGTTCTGTAAGTGGTTGATTTTAAAAGGGTGCATGGTGGGTGAAAAAAAGAGGGTCAGGATCGGCAATGGGGCTGCCCTGTGAGAATCAGTATTACCTGCTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCTACGGGAGTAGTCCGACACGGTATCGAAGGCAGTTCACCTTGCGGGAGGGGCCTTGGCCGCGACATTGCCCATATAGAAGTGGGCCAGGAATGACCCCTTTCTTGACCCTCTTTTTTTCACCTCAGATTCATTCATTAAAAATCAATGACTTATAAAGCTCGGTAAAAAAAGGGGTAAAACGGCTACTGGTGAGGATTTTTCTTTGAAAACGAAAGGTTATCTAGCAAAGTGTCTA # Right flank : AAGCTGATACCGCACTGCATTGTCGCGGGCAAGCCCCCTCCCACGGGAGTACATCCGATAGATATCTATCGCTTGAAGCACGTCTTCGCGACTGAAGTCGCCACACAAGCCAATTCATTCGCGAAAGGCATTCAAACCCAACCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACTCGTCCATATCCCCTTGTTTGCCCATAAGCCTGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCCCATGTCTATGATCCCCACTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGTCGGCAGCAACGTTATGCCAGTACACCGGGTCAGGTGTTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCCAGCGCCGATGGTTTCACGTATCGGATGCTGTACCTCGACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 12081-11633 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVT01000007.1 Pseudomonas cichorii strain Ku1409-10-1 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12080 28 100.0 32 ............................ TGTGCCGATTTACCGTCCCGATCAATTATCGA 12020 28 100.0 32 ............................ TGTCGTCTATCCCCGCAGGAAACGGAGCGGGC 11960 28 100.0 32 ............................ AGGCGTAGAAGATTTTCTGAACGGTTGCCAGG 11900 28 100.0 32 ............................ ATATTCAAGATGACCCGGCTCACAGCCAAGGC 11840 28 100.0 32 ............................ ATCCAGCGCTTCTATCTGCGCCTGCAGGTCGT 11780 28 100.0 32 ............................ ACACACTCAAGAACGAAATCCCCGTCAATCTC 11720 28 100.0 32 ............................ TACATGATGCGCGCCTCTGAGAAGCTGCGAGC 11660 28 89.3 0 ...........CA...........A... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTCTGGTCAGTGAGTCCGGCGTGTTTGCAATGCTGGTTCATCATTACATCCCCGAGAATCGCGCCCTGCGTCACTGGCTGACCCATGACGTATTGCCGATTCTGCATCAGCAGCACGCTGTCACGGGCGATCAGCCTTGCCTGAATCAGATGCAATGGTTCGGCAACGCACTGAGCGTGTTGCAATGGCGCAGTGAGTCGTGGATTCGGTTTCGGGACATGCCCCATGTGGTGATGGAAGTCCCGCCGCAACCTAGACGAGGGATATGGCGCAAACTGCTGGAAGCCTTGAGCGGCAAGCGGCTGGTGATGTGAAAGGCGATTGACCTTCGTGCCCGGCAGGCTTTTGGCAAAGGTCTGCCGGGTTCTGCCCCTCTTTTTTCAGCCCCCTCCAGGCCCTTTTAAAATCAATGACTTATAAAAGCCTCGAAAAAAAGGGTAAAACAGCGCTCTGGCCATGTTTTTGCTTTTAAAACGATGGGTTATTGGGCAGAGTGTCTA # Right flank : CCGAATTGCTCCAGGACCTGAAATTCCCAACCCCACTCTTTTCCCCCTCCCTATATAACCCTCCGGAACCGAACAGGTAAGATAACGCTCATATGGTTCACTGATGTGGCCGAGCGTAGAGGGTGGGTGTGTGAGCGATAGTAAAGTCCGGGTGAATAATCTGGTAACGGGTGATATCTCTCATCCACAAAAAGACATCTTTTTCGCAGCCGTCGAAACCACCCGGATGCCCATGATCTTCACGGACCCCAACCGTGAAGATAATCCGATCATCTTCGCCAACCATGCCTTTCTCGAGATGACGGGGTATGAAAGCCATGAAATTGTGGGCCGCAATTGCCGCTTTCTGCAGGGCCCCGATACGGATCGCGAAGTGGTCGCCGCCTTGCGCAAGGCCATCGAGAACCGGGAAGACATCGCTACGGAAATCCTGAACTACAAGAAGGACGGCTCGTCGTTCTGGAACGCGCTGTTCATGTCGCCGGTGTTCAATGACAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 26703-26195 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLVT01000007.1 Pseudomonas cichorii strain Ku1409-10-1 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26702 28 100.0 32 ............................ ATGAGCGGCTTTCGTTCGCAGAATCGCCGTGA 26642 28 100.0 32 ............................ GTCAGAAGCTTGGGTAACGGCTACTAAAGATT 26582 28 100.0 32 ............................ GCGATAAGCACCGACCCCGGCCGCGACCGCAG 26522 28 100.0 32 ............................ AAATTAATATCGCCAGTGCCATACACGATCTC 26462 28 100.0 32 ............................ GCCGCGCCGCCCTGGTGCTCTCCGACTTGCTC 26402 28 100.0 32 ............................ CGAGTGCCCAGGTTCATTGCGGTATTGATCGT 26342 28 96.4 32 ............A............... CATTGGATTTGAGACAGGTACAAAAAGCCCTG 26282 28 96.4 32 ......................T..... TCACATCTGAAGAGATTGATGCCCGAAAAAAA 26222 28 75.0 0 ............A.......TC..ACTC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCACATAGCAAGACACTCAAGCGGTTGCAAAGCTTGGGGTGAAAAAAACCGGCCAGTTGAGCCGGTTTTTTTATGCCCGGGTTTTGGTGATTGCCGGGCCTGTAGGAGCGCGCTTGCCCGCGACGACTGTCGCCCTGCCAATGAAAATGCATTGCCTGTACGAACGTCGCGGGCAAGCGCGCTCCTACTTCAATCGCAGCTACCTGAGTAGAAGTGAATTCATTCGCGAAGACGGCACTCCAGACAATACACATCCTTTGAATGTACCGGCCTATCGCGAATGAATTCGCATACAGGTCCGGCACCAAACCACGACTTCAAGCACCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCATCCCTTTAAAATCAACAAGTTACGACTCCCTCAAAAAAGAGGGTAAAACGGCCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATAAGGCAAGGTGTCTA # Right flank : CACTTCATAACCGTCAAATCCTACATCCCCACTCACTACCGCCCTACAACCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTCCCCCACCCAGCCCCCAAGCTACCCTTCCCGACAGTTCGCTACCAATTCAGCGACCGGGTTTGGCGACCCGACAAAGCTAAATCTCTCCCCATCGTGATGCAGGCGCTTTATCCTGTCAGCTCATCGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGCCTGCCGGGCTTGGAGATGGCTACCGGTTCGCCAACCCACACACAACTGCCACCCATTGTTTGGCGACAATTCGGGGCAGTTCCATCAGCCATTTCCGATGAATGAAAACCATGCAAAATTTCAACAGCGATCTTCCCTGTACATCCGCCTTCGAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTCCGTTCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTCGCCCGCTTGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //