Array 1 277548-279315 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWE01000001.1 Photorhabdus akhurstii strain DSM 15138 scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 277548 28 100.0 32 ............................ AAGATAGAGGAACGTTTAGCATTTGCATTCTT 277608 28 100.0 32 ............................ AGAAGACCGAGCGACTCCTAATGCTCTTTTAC 277668 28 100.0 32 ............................ ATAATATACGCCGTGGTTTACTTTTTAGACCA 277728 28 100.0 32 ............................ TGACGCGGATAGGTACGAGTGAGAATGAAACT 277788 28 100.0 32 ............................ AAACCGACAATGCACGAGTTGAAAATGATAAT 277848 28 100.0 32 ............................ TGGAACCCCAGTCGTAAAGCAATATTTAGAGT 277908 28 100.0 32 ............................ TTGTCGCTGTGACAGCCCGCTTGCCGCGCTTG 277968 28 100.0 32 ............................ TTCGCTAACCAAAGTATCAGAAGCCATTCTTT 278028 28 100.0 32 ............................ AAGTGGATCAATTCAGCTATGCTAATGTCCTA 278088 28 100.0 32 ............................ GCTACGGCAACAGAAAAATAACAGACTGATTT 278148 28 100.0 32 ............................ TAAACGTTGGGTAGTTAGTCCGGACTTACAGC 278208 28 100.0 32 ............................ AGTGATTCCTCCGCATTACAACTAATTCCATA 278268 28 100.0 32 ............................ GATGGCTATTGTCACATAAGGTATTATTACCC 278328 28 100.0 32 ............................ ACAGCAACAAATTATCGCTCAACGTAATGAAG 278388 28 100.0 32 ............................ ATTTGCCTTGCATATTGCCAATAACACCGAAT 278448 28 100.0 32 ............................ CTAATGTTGCTTTTGTCATTAATGACATTAAA 278508 28 100.0 32 ............................ AATTCCATTATCTACCGGTGCTTTAATTGATA 278568 28 100.0 32 ............................ TACTTGTACCTCTGAGTTCTCATCGTTAGCTA 278628 28 100.0 32 ............................ TTCATCTAAACAACTATTGCCATACAAAATCT 278688 28 96.4 32 .......T.................... TTAGTGATTCCACAGGCATTAACTACACGACC 278748 28 100.0 32 ............................ TGATTTAACTCTGCATTGTTCTGACTGAGCGT 278808 28 100.0 32 ............................ AAACTTTCATTTTGGTCATTAATTGACATATA 278868 28 100.0 32 ............................ TATTGATACCTCTCAGTTCAGGTTTCCAATAT 278928 28 100.0 32 ............................ TGCACGTAGCCGTTGTATTCCAGAGTACGATA C [278938] 278989 28 100.0 32 ............................ CAAGTTTAAATTAATTATGTCTGAGCATCAGA 279049 28 100.0 32 ............................ TAGAATGACAATGGCTTATTTAGATTGTGAAT 279109 28 100.0 32 ............................ AAGCAGGAAGACCGGAAGCACCGAGGCTATCA 279169 28 100.0 32 ............................ AATATGCTTTGAAACCACGGCGTACCTTCGGT 279229 28 100.0 32 ............................ GGCTCGGCACTCATCAGGCGGTGACAATGCGT 279289 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGAAGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGTTTGTAGTTACTTAGTTTCTAATCAATGGACGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGCGTTGGATGAGGAATGGTGCCCGGGTTCCGAGTGTTCAAAATAATGCTTAAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTGCAGTTATTACAATGTATTAAGGAACATTTGGTTGTTTTTGTGGTGGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGCGCTTTTGCTATGCCCCAGTTTTGACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAATATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGGGATTAGTTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGTGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 312255-312461 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWE01000001.1 Photorhabdus akhurstii strain DSM 15138 scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 312255 28 100.0 32 ............................ ATGACTAAAAATACAGAGTCTTTAATATCCGC 312315 28 100.0 32 ............................ CATGTAGGCATATCATTTACAAACGGAACAAC 312375 28 100.0 32 ............................ TTGCTTATTAGAATACGTTGCCGAGCTTGTTT 312435 27 89.3 0 ...........T.........-C..... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGTAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGATGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAAGAGCAACGTACTCATTTACCATTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACATCAGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCGTCCCTTGGTTTTGATCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACAA # Right flank : AAAAAGAGTTTTGCTTTATTAATAGCAGAACTCTTTTTTTCCTTAAAATTTTGTATTAATAATACTTATTGACGTGTGTATCTTAAGAAATATTTAGGGAATTGAGGACGATATGCCCGTAGGAAAATAATGTGGCTTTGCCTGATAAATGCACCCGATCTCCATGTAATTCACACATAATGTCTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCTCCAAAATGGGGCTAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACGCCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCACCCAGTGCTGTTATGACAACTCCTGGTAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTGCGGTTTCTAGTAAACAAATGTAGCGATTATGAGAGACAAAAAGTTCGGATATTTTCTGACTTAATGCATTTTCG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 313664-313932 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCWE01000001.1 Photorhabdus akhurstii strain DSM 15138 scaffold_0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 313664 28 100.0 32 ............................ ATACCTGATACTACAATTGAGATGTGGTCTAA 313724 28 100.0 32 ............................ ATCTGGGAATAATTCAGCATCACATTGACAGA 313784 28 96.4 33 A........................... CGATAGCATTCGGGTTAAACCTTGATTCTTCTT 313845 28 100.0 32 ............................ ATACGAGCTAAAAACTCCCGGTATTGGTTTGT 313905 28 78.6 0 ...........T.........AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAACCAACGTAGTTGGTTATCGACTAGGAAAGCAGTTTCTGAGAGATTTATTTCCATAGCAATAGATAATAGAGTTTCATCTGGAAGCCAATTATCTAATATAACAACAGCGGCTGGATTACCAGAGAATGGGCTATCGGTGAATGCATCGACATGATAAATGGGTAGCGAAGTCATTTGTATCTCTCTTAAAATAGAATTAGTCATGAAAAAGGGATCAATCTTCTTAATTTTTATAAAAAAATTGCCCGCTATTTTATACAACTATATGTGATCGTAAAAAGAGTAAGCAGCTCAGTTTTAGGATATTTAGCTGGTTTTCTGAAGCATTGGGTATCATTGCATTAACCAGATATGCGACCCTATTTTTACCCTTTTTTTGCAGTTAATTTTAACTTGTTGATTTTTATATAATATTATATTGTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGATATGTTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACTATTACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACCGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //