Array 1 57061-57937 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000048.1 Alkalihalobacillus clausii strain 7522 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================================================================== ================== 57061 32 93.8 33 ..........AT.................... AAGCTCAACGGAATATGCTGATGATGGTATCCT 57126 32 93.8 36 ..........AT.................... CACGACTCCGATGATGATAGTGTTCCTGTGCACCAC 57194 32 96.9 35 ...........T.................... TAGGACTTCTGGGTCCATATGGTAGGTGAGCTGGT 57261 32 93.8 35 ...........T...G................ AAAGCATCCGTAGTTATAGAAGCTGGCGAAGTCGG 57328 32 93.8 34 ...........T...G................ TATTACATGGCCGAACTTGATGATGAATCTGAAT 57394 32 93.8 34 ...........T...G................ GCGCCGGAACTTTGTGCAGCTGCCATGAACAAAG 57460 32 100.0 34 ................................ CCACGTCTGTTATAAGTAGGAAGTACATATGCAG 57526 32 100.0 34 ................................ TGATAACGGGTTAGACTATGAGTATAACTTAACA 57592 32 100.0 34 ................................ TCGAAACTTTCGCCAGTAAGTACAGGTTTAGATT 57658 32 100.0 30 ................................ CAATCTTCTTTTTCGTTATACCCGTAATAA 57720 32 93.8 34 ..........AT.................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 57786 32 78.1 88 ..........AT.C.......AC.......TC TCTTTAACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGTAGAGTTTGGCCCCCACTCTTTTTCACGCAAAAAC 57906 31 75.0 0 ...........TT........AC..-...TCA | A [57916] ========== ====== ====== ====== ================================ ======================================================================================== ================== 13 32 93.3 38 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAATAGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAATCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGTTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGGAGATCACCCATATGAATCTTATTCTTTGAAATTAAACACA # Questionable array : NO Score: 8.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTTGTGGGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 73239-73669 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000048.1 Alkalihalobacillus clausii strain 7522 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 73239 32 100.0 35 ................................ CCTCCCTAATCGATCTTTTGATCGAGAAGGGGCAG 73306 32 100.0 34 ................................ TCTCTAGCGTCCACGGTAGCCATCGTAGTTGCGC 73372 32 100.0 35 ................................ TGCCATGTGTATCGCCCCTTTAAATGTTAATGTAA 73439 32 100.0 36 ................................ GTGAGTGAGTTTAAATTGTAGGTGGCTAGGTGTGCC 73507 32 100.0 33 ................................ ATTGTGAAGGAATGTCTTTGCATGTTTGATATA 73572 32 96.9 35 ...........................A.... AATTTCCTCTGCCACCTGATGATTCAAGCTCCGTA 73639 31 71.9 0 ..T......CG..C.......GC....-..GC | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.5 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : CCCGCCATTTGTGTGGAAGTAGGTATAAGCATGCCTGTATTGATTACATATGATGTGCAAACTTCAAGCACTTGGGGAAACAAACGGTTGCGAAAAGTAGCGAAAGCTTGTCAAAATTATGGGCAGCACGTACCAACTCTGTATTTGAATGCATTGTCGATACGGCCCAACTAACTGCGTTAAAACTGGAACTTACTAGTTTAGTTGACGAAGAAAAAGACAGCCAACGGATTGACCGTCTCGGCAACAACTATAAAACGAAAGTGGAACATATTGGCGCCAAACCGACACTCGAATTAGAAGATCTGCTCATCTTTTCAGGTGAGAACCCAAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACACACTAAAATGTGTGTGAATATGTATCAAAATGTAATAATGTGATCTTGTTGGGTGTGCTATGATAAGAATTAGAAGCGAAATCATTCGTTTTCGGTTGTTTATTTCTAAAAGATGGATAATATTCGCT # Right flank : CCAAGACAAGCCTCACCGCTTGCTACAACAAGTCTTGTCCTACTCAATTCGAGTGCATAATACGTTTATCTCACTAGATCAGCAAGTGCATCACACCTATAAATACACGTATCTAAACACAAAGCTAAAAAGTAAATTCCAATTAAGAGGGAGGAGTAAATGATGGAACAAAAAGAAATGTTAGAGCTCTTATTACAGAAGGTAACTGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCACAATTCGGCAGTGGCGCAAGATATCAAAGAATTAAAAGAAGGTCACATTATGATTAAACAAGCAGTGCTTGAAACGAATCAGAACGTAAAGAATATAGAGACGAGTCTCGAGCATTTGAGTCACCAAGTGAGTCAGTTATCTGAAGATCAAAAATCAGTACGGGAGATTTTAGGCGATCATGAAGTGGCGATTCGAACGCTTAGAAGGAAGCCCGTCTAATAGGTAATATCCTAGGAGAACAGGGAGTGTAAACTAAA # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 125447-126012 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000048.1 Alkalihalobacillus clausii strain 7522 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 125447 32 100.0 35 ................................ TTTTTATTTTGCTAAAAAATGGTGGTGAGCATTTG 125514 32 100.0 34 ................................ CTCTTTACGAGGAGAGTGACGATGATAAGACGTA 125580 32 100.0 36 ................................ GTAACAGTCATCTATCCAATTAGATAACTGTCTAGC 125648 32 100.0 34 ................................ GCAGCCAAGGCGGAAGAGGCACTTGGCGCAACCT 125714 32 100.0 35 ................................ CGTGTCTTTATACAACTGTTCACAGTGCTCTTTCC 125781 32 100.0 35 ................................ CCGATTGATACCATTGATGTTTTCGCTCAGCTGTT 125848 32 100.0 36 ................................ CGTCATTTTGCTTGCTTCCATGTTATATGAGACGAC 125916 32 96.9 33 ...........A.................... TGAGATAGCGTCGCTGATGTCGCCGCTATCCCA 125981 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 99.3 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : CATCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAGGAGCTATGTAGAGCCTGCCGCTACTTTTGCTGGCAGGCTTAGGCTTTGTATTTTTGGGAAAACTCGTATTTATGAGTGGCTGCTGGGACAGTGTTTGTGGAATTGGCGATTGCTTGCAAAGAAAGGCATCGATTTTTAACCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCGATTTTATAGTGCGAACCCCAAGCACACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGAAAATGTGTGTAAAAGTGGTGAAATGTTGTTAATTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGGCG # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACATTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAATAAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 31238-30876 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000073.1 Alkalihalobacillus clausii strain 7522 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 31237 32 96.9 34 .............................A.. AAGTTGGAAGCGGGTCAGGGTGGGTCGGCGCCAG 31171 32 100.0 35 ................................ CATTGAAGCTTATAGTAAAATTTTTGCCCAACGGG 31104 32 100.0 34 ................................ CTTTCAACTTCCTGGACAGCGACCAACCGCCCAA 31038 32 100.0 34 ................................ AAATTGATTTATATATTTTTCTTTAAACTCCATA 30972 32 100.0 33 ................................ ATAGCCGCCGTTGAGTCCGTAAAACTCAACTTG 30907 32 96.9 0 .............................A.. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.0 34 GTCGCACTCTTAATGAGTGCGTGGATTGAGAT # Left flank : CTTGTCAAACGATAAACGGAACGGTTCAGGAAACATATTTGCTTCTCAATCGTAGCAACTAAGAAGACATAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCCCTGGAAGAAGTAGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTCTTAACAGCAAGGATCAGGCCCATTTCATACACATATCAAACAAGAATGGCGAAACAGATACACAACTCATAGGGGAGAAGGGATGTTAGTAGGCAACCGACTCCCCTCAATCGTTTCTTTGTGAGCAAGCGAAAAGTTCTGTATGATTGAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTATACGTATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATAATTGATTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TGCTTGATTACGGCGTCTGACATCATGCCGTCACGTCACACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATCGACGTAAGGCATTTGGGAGGCGGATCTGCCATAAAACGAAAAACAGTAGTTTTAGGTATAAGTGGGTTTCTAGTAATTGGTATGGCTGTAAGTGCAGTTATCTTATTGAATGCGGACAAGGAATATGTGCCAGGGGAAACTCAATTAAAAGAGAATGAAACGGACTCGATTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAACTAGTTGGTGTTTGGTTTTGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTAAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGTCCGTCGTTAAGAATGCCGCGATTGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAATGAGTGCGTGGATTGAGAT # Alternate repeat : GTCGCACTCTTAATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 38763-37664 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000073.1 Alkalihalobacillus clausii strain 7522 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 38762 32 100.0 33 ................................ GTACTGCACAGCGGACAAAAGGGCAGATTCAGT 38697 32 100.0 36 ................................ TGGAATGTCAGAAGAAGAAACTGGCCTCGTTGGAAG 38629 32 100.0 36 ................................ CCACGACCTCACAATGTTTATTTACACTTGATAAAA 38561 32 100.0 36 ................................ TACAGTTTACGTGGAGCCATTTCTGAATTCGAGAAA 38493 32 100.0 34 ................................ CTTAGCGACGATATCTCGTATTGCTTGTTCTAGG 38427 32 100.0 37 ................................ TTTTTCTAAGCTTCCTGATTTATTCAACTGGATTGGG 38358 32 100.0 34 ................................ AGACTTGGTGACGTTATGCGGATTGTCCCGTCTT 38292 32 100.0 35 ................................ TTTTGCGGTATTTTTATGCGGACGAAGTACACCGC 38225 32 100.0 34 ................................ GACCTAGGGCAACACGAAAACTAAACTGGTCGCG 38159 32 100.0 34 ................................ CACGCCTACCTAGTCGACCGCACACGCGAACTTT 38093 32 100.0 35 ................................ ATTGTTATTTATCGGGATCGCCTTTTTAGATATGC 38026 32 100.0 35 ................................ CAGAAAGTCAAAAATTACGAAAACCGAACACTCTA 37959 32 100.0 34 ................................ TAAAGAGCAATAGCAATACATCAGATAACGCTGC 37893 32 96.9 35 ...........................A.... GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 37826 32 100.0 33 ................................ GTAAGTCTTGCCCGTCTCACGCGCCAGCTCCAT 37761 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 37695 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 98.3 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCGAAATCAAAAATTCGCATCGTTGGCAGTGAAAACACGGTTGTGCCAGCGTTTGCGTGAAAAGTGTGAGCCCGGAGTCTTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCATCCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 45794-45365 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000073.1 Alkalihalobacillus clausii strain 7522 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 45793 32 100.0 35 ................................ GCCGATTAAGTAAACGATCTGACCGACTTTTACGT 45726 32 100.0 34 ................................ ATATCGGCTGAAAAAGATTGGTCTAGTCCGTAAT 45660 32 100.0 33 ................................ CACATTCACATTCTGAATATCTAACTGGTTGAC 45595 32 96.9 36 ...........C.................... AATTTTCATGTTCTCTTCCACTCCCTACCTTTTCGC 45527 32 96.9 33 ...........C.................... ATTCATGATTTCCTCCTATGCCGTTTTGATGGA 45462 32 96.9 35 ...........C.................... CGTTTGGTTGGTTCTTCATCTTTTCGATGATTTTT 45395 31 81.2 0 ...T......AA........A-.........G | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGTTGAGGTAGTTCGTGGTTCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAAGGTTTTCTAAACCTATTATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAACCTAAATATGAAATAATATGTGTAATAATGTTTAAATGTCGTTTGTGTCCTATGATATGATAGAAGAAATGGGCGTTTTTTCCCTTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : GCAACGTCCACCGATTGCAATATAAGGCGCTTGGTCGCACTCTTACTTCTACCATTTCCACGAGGCCACACGACCAATTCCTCTTGAGATATGAAGAAAGTGTCCACGTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAAATGCATGACTAAACAGCTGAACCGACCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTCGTTTTTCGCCACTCGCGCATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTGGCATTTGTCACGTTAATCGTTGGGAGCGTGACACGCCAAATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAAACATTCT # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 53371-52737 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000073.1 Alkalihalobacillus clausii strain 7522 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 53370 32 100.0 35 ................................ AGAAGACGAGCAGTTTCCTAATACAAAAGATTTTG 53303 32 100.0 35 ................................ CGCTTACGTTACAAAGATAAAACCACAGGGGAGTG 53236 32 100.0 37 ................................ ACTCGTCAATCTGTGCCTGTAGTCCATCAAGGATATT 53167 32 100.0 34 ................................ TAAACGACGAATAGGGTCTAGACTTGCGTTTGCT 53101 32 100.0 34 ................................ ATCGTAGTTGGTGGCAGTATTATGACGCCCCTCC 53035 32 100.0 35 ................................ CTTACCCGCCCCGGCACCTTTTCGCGTTCTAAATC 52968 32 93.8 34 ..........TA.................... AGTAAATTTAGTTGGACGTTTGACAAAAGACCCA 52902 32 93.8 34 ..........TA.................... TCAGGAATTTGGGCTACCCACAGCTTTGCCCCTC 52836 32 90.6 36 .C........TA.................... GAAAGAACGATAACTTCATGTGTTCCAAACAGCAAC 52768 32 93.8 0 ..........TA.................... | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 97.2 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CATCGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTGGTGTTCGTGGTATTAAAATTTAAGTGGGATTAGAAGGATGAGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATTACCCGCACCAAAAAAGAGTGCAAATATGAGCTAATGTGTATAAAGATGTGAAAATGCGGCTCGTGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTATCTGTGGTTTTATTTCCAGAAAATAGGGGAATTTCGCT # Right flank : TTGCTTCCGGCGAACGGAATGTGGCTTTCTACTCGGCGCACTTTTTATAACTGCGCCAATTTAACATCCACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCTACGCCCATATTGCTTATTTTCGTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCATCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCGGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACATC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 64092-62997 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000073.1 Alkalihalobacillus clausii strain 7522 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 64091 32 100.0 34 ................................ ACCAGATTATCAGATTGCAGGTACGACCGTTGAT 64025 32 100.0 33 ................................ AAAACAGTAAGCTTGCCGAATCGCTCGCCGGGT 63960 32 100.0 35 ................................ TACAGCCTCCTTTGTTTTTTGTTTATCTAGCTCTG 63893 32 100.0 34 ................................ TCTAATTGAGTTGTCCATTCTAAATTTTGAACTC 63827 32 100.0 35 ................................ CCAGGGAATAACCGCCTATCTGATTGTTGCTTATT 63760 32 100.0 34 ................................ TTTTTTAGCTCGGCCAATGTGATAGTGATCGAGT 63694 32 100.0 34 ................................ ATTTGAAAGTAGGGAATTTGAAAACTTTGGCCAG 63628 32 100.0 34 ................................ TTCGCGATAAGGACGTAGCGGCGCTCTTTGTCGG 63562 32 100.0 35 ................................ GCCAATTATAAAGTCGATCACGGCGCGACTGGCAC 63495 32 100.0 35 ................................ GCAACCTGACGAGCGGCGCGGATTGGAGATATACC 63428 32 100.0 34 ................................ ATGCAACTCGTTAGACATGTATGCCCTCCCAATC 63362 32 100.0 34 ................................ ATCGTGTCAACTTCCCTCAAACGATAGACCACTT 63296 32 100.0 35 ................................ TTTATCACTTCTATGTTGATTGGACTTGGAATTTA 63229 32 96.9 34 ............G................... GCCTGTTGTATTTCCTAAACTTGGAGCAACTACA 63163 32 100.0 35 ................................ ACTTTCTCCCCTCCTTCATCTGCTCCAAAGCTTTT 63096 32 90.6 36 ..............A..C.......C...... AGAAAGAAATCCACCAATGGATCATTTGTAGAAAAA 63028 32 78.1 0 .....C...GT..G.TA.....A......... | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 98.0 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CAAGTCTACGGGTCGCACTCTTCGTGAGTGCGTGGATTGAAATGCCTTCGTCAGAAGTTCCTAGTCTAGCGTTAAAGTCGCACTCTTCGTGAGTGCGTGGATTTAATAGTAGGGGTGGCAAAAGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCCTGATGATAAAGGGAAATTTCTCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATGACAAAACTGCTAAAATTGGGAGTTGAAGATCGAACCCTAAATTGTGGAAAATATTTGTGGGTAGGTCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGGTCACCCGCACCAAAAAAGAGTCTGAATGTGAGATAATATGTATTAAAGTGTTAAAATGTTGTGCTCTTTCCATGTTATGATGAAAAAAAGGAGCGACTTTCCTTATTATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : GCCCAAAGACATCTTCTTCCATTTCAACTTTGAAGTTGCACTCCATATGAATGGAAGTCGTCATACTTATTGTTTGAGCGGATGGTTTCAACATCCGCTCTTTGGCGTGAATCCTTTTTTAACCAATGGGCTTCTTTGACAAGCGTCTTCTTCGAAAGCCATAGAGCGATAGGAATCGAAGGAATCACAAATGATTCCTAATGAGAAAACGATGATGATGTCTAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTCCAATCAATCTAATAAACCCTTAAAAAAACACTACCAGATCTTAATGCAACAGGAATATCTACACCCTTGCTTGACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCATTGAAAGCGCTTACTGTTTCGGTGGTTTTATTGTTGGCTGGTCTGGTTTTGGGCGATGATCGTATGGAGGCTCATGAGTTGCCGTTGTTTCATTTTGAAAAAACGCTGATTGAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 65721-64484 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMP01000073.1 Alkalihalobacillus clausii strain 7522 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 65720 32 100.0 34 ................................ AGACAACCAGGCTAGTTGGCGATTTCGACTGATG 65654 32 100.0 36 ................................ TCGCATCATTCCATATGCTATTAATAGAGCACTCAA 65586 32 100.0 33 ................................ AGCTAAGGCATTATTATAGTGCCTGGAAGCATC 65521 32 100.0 36 ................................ CATGCCGTGTAGACGGCCAGAACCGCGACAGCAAGG 65453 32 100.0 34 ................................ CCATCGTTATGCTTTTTCGCATAATCTAGAAAGC 65387 32 100.0 36 ................................ TATGAAAAAAGTTTTGTTACCAATGTCATTATTTAT 65319 32 100.0 35 ................................ AGTAGACAGAGGTTGGATTTGTGGAAACGCGAGGA 65252 32 100.0 35 ................................ ACGATTGTGCTGGCGTCCCAAAGCTCCAAATCGTG 65185 32 100.0 34 ................................ TGTAGCGTCATATTTTCTTGCGCTTTGGTTAAAG 65119 32 100.0 35 ................................ AACGACGCCTTATTTGACTCGATCCTTTACGAGGC 65052 32 100.0 35 ................................ ATACAGGCGAAGGGGCTCCGGAAGCAACACTAGGG 64985 32 100.0 36 ................................ TGATTTAACGGTCGTTAATGCCGCCCGTGTATCTTA 64917 32 100.0 36 ................................ CATTGTGGTTTGGTCTCGTCTATTGTCAGATATACA 64849 32 100.0 36 ................................ CATTTCCCTTAAATCTAGAACCCAAGCCTTTTCTTC 64781 32 100.0 36 ................................ GGTGGTGGTAAGCACTAATGCAGGAGACGAATTCAT 64713 32 100.0 35 ................................ CGATGCAGACGACGCTTAAAAAGCAATTGCGTAAA 64646 32 100.0 34 ................................ CTGAGAGCGCTGCCAAAGGGGCGCAAGTCTACGG 64580 32 100.0 33 ................................ GCCTTCGTCAGAAGTTCCTAGTCTAGCGTTAAA 64515 32 90.6 0 ...........................T..TA | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.5 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : GTAGGGGTGGCAAAAGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCCTGATGATAAAGGGAAATTTCTCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATGACAAAACTGCTAAAATTGGGAGTTGAAGATCGAACCCTAAATTGTGGAAAATATTTGTGGGTAGGTCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGGTCACCCGCACCAAAAAAGAGTCTGAATGTGAGATAATATGTATTAAAGTGTTAAAATGTTGTGCTCTTTCCATGTTATGATGAAAAAAAGGAGCGACTTTCCTTATTATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCTGTCGCACTCTATATGAGTGCGTGGATTGAAATACCAGATTATCAGATTGCAGGTACGACCGTTGATGTCGCACTCTATATGAGTGCGTGGATTGAAATAAAACAGTAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //